Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0230

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0227 and EX28DRAFT_0228 are separated by 217 nucleotidesEX28DRAFT_0228 and EX28DRAFT_0229 are separated by 41 nucleotidesEX28DRAFT_0229 and EX28DRAFT_0230 are separated by 249 nucleotidesEX28DRAFT_0230 and EX28DRAFT_0231 are separated by 43 nucleotides EX28DRAFT_0227: EX28DRAFT_0227 - Putative transcription regulator (DUF1323), at 178,490 to 178,852 _0227 EX28DRAFT_0228: EX28DRAFT_0228 - tRNA, at 179,070 to 179,145 _0228 EX28DRAFT_0229: EX28DRAFT_0229 - tRNA, at 179,187 to 179,262 _0229 EX28DRAFT_0230: EX28DRAFT_0230 - FOG: EAL domain, at 179,512 to 181,668 _0230 EX28DRAFT_0231: EX28DRAFT_0231 - nucleoside transporter, at 181,712 to 182,899 _0231 Position (kb) 179 180 181 182Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 178.624 kb on + strand, within EX28DRAFT_0227at 178.624 kb on + strand, within EX28DRAFT_0227at 178.624 kb on + strand, within EX28DRAFT_0227at 178.624 kb on + strand, within EX28DRAFT_0227at 178.625 kb on - strand, within EX28DRAFT_0227at 178.712 kb on + strand, within EX28DRAFT_0227at 178.783 kb on + strand, within EX28DRAFT_0227at 178.783 kb on + strand, within EX28DRAFT_0227at 178.784 kb on - strand, within EX28DRAFT_0227at 178.804 kb on - strand, within EX28DRAFT_0227at 178.896 kb on - strandat 178.896 kb on - strandat 178.898 kb on - strandat 179.035 kb on + strandat 179.064 kb on + strandat 179.064 kb on + strandat 179.077 kb on + strandat 179.077 kb on + strandat 179.077 kb on + strandat 179.135 kb on + strand, within EX28DRAFT_0228at 179.179 kb on + strandat 179.179 kb on + strandat 179.179 kb on + strandat 179.180 kb on - strandat 179.180 kb on - strandat 179.269 kb on + strandat 179.347 kb on + strandat 179.348 kb on - strandat 179.348 kb on - strandat 179.482 kb on - strandat 179.512 kb on - strandat 179.597 kb on - strandat 179.601 kb on - strandat 179.622 kb on - strandat 179.668 kb on - strandat 179.736 kb on - strand, within EX28DRAFT_0230at 179.736 kb on - strand, within EX28DRAFT_0230at 179.838 kb on - strand, within EX28DRAFT_0230at 179.875 kb on - strand, within EX28DRAFT_0230at 179.877 kb on + strand, within EX28DRAFT_0230at 179.959 kb on + strand, within EX28DRAFT_0230at 179.975 kb on + strand, within EX28DRAFT_0230at 180.019 kb on + strand, within EX28DRAFT_0230at 180.060 kb on - strand, within EX28DRAFT_0230at 180.115 kb on - strand, within EX28DRAFT_0230at 180.138 kb on - strand, within EX28DRAFT_0230at 180.227 kb on + strand, within EX28DRAFT_0230at 180.247 kb on + strand, within EX28DRAFT_0230at 180.247 kb on + strand, within EX28DRAFT_0230at 180.247 kb on + strand, within EX28DRAFT_0230at 180.275 kb on + strand, within EX28DRAFT_0230at 180.298 kb on + strand, within EX28DRAFT_0230at 180.304 kb on + strand, within EX28DRAFT_0230at 180.304 kb on + strand, within EX28DRAFT_0230at 180.348 kb on + strand, within EX28DRAFT_0230at 180.349 kb on - strand, within EX28DRAFT_0230at 180.388 kb on + strand, within EX28DRAFT_0230at 180.388 kb on + strand, within EX28DRAFT_0230at 180.389 kb on - strand, within EX28DRAFT_0230at 180.404 kb on - strand, within EX28DRAFT_0230at 180.478 kb on - strand, within EX28DRAFT_0230at 180.496 kb on + strand, within EX28DRAFT_0230at 180.525 kb on + strand, within EX28DRAFT_0230at 180.525 kb on + strand, within EX28DRAFT_0230at 180.681 kb on - strand, within EX28DRAFT_0230at 180.718 kb on - strand, within EX28DRAFT_0230at 180.954 kb on + strand, within EX28DRAFT_0230at 180.986 kb on + strand, within EX28DRAFT_0230at 181.084 kb on - strand, within EX28DRAFT_0230at 181.084 kb on - strand, within EX28DRAFT_0230at 181.126 kb on - strand, within EX28DRAFT_0230at 181.126 kb on - strand, within EX28DRAFT_0230at 181.126 kb on - strand, within EX28DRAFT_0230at 181.126 kb on - strand, within EX28DRAFT_0230at 181.267 kb on + strand, within EX28DRAFT_0230at 181.385 kb on + strand, within EX28DRAFT_0230at 181.385 kb on + strand, within EX28DRAFT_0230at 181.414 kb on + strand, within EX28DRAFT_0230at 181.414 kb on + strand, within EX28DRAFT_0230at 181.415 kb on - strand, within EX28DRAFT_0230at 181.415 kb on - strand, within EX28DRAFT_0230at 181.449 kb on + strand, within EX28DRAFT_0230at 181.449 kb on + strand, within EX28DRAFT_0230at 181.467 kb on + strandat 181.467 kb on + strandat 181.470 kb on + strandat 181.482 kb on + strandat 181.483 kb on - strandat 181.491 kb on + strandat 181.521 kb on + strandat 181.612 kb on + strandat 181.667 kb on - strandat 181.732 kb on + strandat 181.733 kb on - strandat 181.826 kb on - strandat 181.826 kb on - strandat 181.841 kb on - strand, within EX28DRAFT_0231at 181.982 kb on - strand, within EX28DRAFT_0231at 182.038 kb on - strand, within EX28DRAFT_0231at 182.071 kb on + strand, within EX28DRAFT_0231at 182.176 kb on - strand, within EX28DRAFT_0231at 182.176 kb on - strand, within EX28DRAFT_0231at 182.176 kb on - strand, within EX28DRAFT_0231at 182.322 kb on + strand, within EX28DRAFT_0231at 182.322 kb on + strand, within EX28DRAFT_0231at 182.322 kb on + strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.344 kb on + strand, within EX28DRAFT_0231at 182.346 kb on + strand, within EX28DRAFT_0231at 182.346 kb on + strand, within EX28DRAFT_0231at 182.346 kb on + strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.360 kb on - strand, within EX28DRAFT_0231at 182.400 kb on + strand, within EX28DRAFT_0231at 182.401 kb on - strand, within EX28DRAFT_0231at 182.432 kb on - strand, within EX28DRAFT_0231at 182.438 kb on - strand, within EX28DRAFT_0231at 182.438 kb on - strand, within EX28DRAFT_0231at 182.439 kb on + strand, within EX28DRAFT_0231

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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178,624 + EX28DRAFT_0227 0.37 -0.8
178,624 + EX28DRAFT_0227 0.37 +0.5
178,624 + EX28DRAFT_0227 0.37 -0.6
178,624 + EX28DRAFT_0227 0.37 -1.0
178,625 - EX28DRAFT_0227 0.37 -1.6
178,712 + EX28DRAFT_0227 0.61 -0.1
178,783 + EX28DRAFT_0227 0.81 +0.6
178,783 + EX28DRAFT_0227 0.81 +0.3
178,784 - EX28DRAFT_0227 0.81 -0.3
178,804 - EX28DRAFT_0227 0.87 -1.7
178,896 - -0.5
178,896 - -2.1
178,898 - +0.0
179,035 + -2.1
179,064 + +0.5
179,064 + -2.1
179,077 + +0.9
179,077 + -0.4
179,077 + -1.6
179,135 + EX28DRAFT_0228 0.86 -1.7
179,179 + -1.0
179,179 + +0.8
179,179 + +0.0
179,180 - +2.0
179,180 - +0.9
179,269 + +0.6
179,347 + +0.6
179,348 - +0.3
179,348 - -0.7
179,482 - +0.2
179,512 - +0.2
179,597 - +0.9
179,601 - +1.0
179,622 - +3.0
179,668 - +0.9
179,736 - EX28DRAFT_0230 0.10 -1.4
179,736 - EX28DRAFT_0230 0.10 -1.8
179,838 - EX28DRAFT_0230 0.15 -2.1
179,875 - EX28DRAFT_0230 0.17 -0.4
179,877 + EX28DRAFT_0230 0.17 +0.3
179,959 + EX28DRAFT_0230 0.21 -1.7
179,975 + EX28DRAFT_0230 0.21 -1.7
180,019 + EX28DRAFT_0230 0.24 +2.0
180,060 - EX28DRAFT_0230 0.25 -1.3
180,115 - EX28DRAFT_0230 0.28 +0.4
180,138 - EX28DRAFT_0230 0.29 +0.3
180,227 + EX28DRAFT_0230 0.33 +0.8
180,247 + EX28DRAFT_0230 0.34 -2.4
180,247 + EX28DRAFT_0230 0.34 -1.9
180,247 + EX28DRAFT_0230 0.34 -0.0
180,275 + EX28DRAFT_0230 0.35 +1.3
180,298 + EX28DRAFT_0230 0.36 -0.1
180,304 + EX28DRAFT_0230 0.37 +0.1
180,304 + EX28DRAFT_0230 0.37 -0.4
180,348 + EX28DRAFT_0230 0.39 +0.9
180,349 - EX28DRAFT_0230 0.39 +0.3
180,388 + EX28DRAFT_0230 0.41 +1.1
180,388 + EX28DRAFT_0230 0.41 -1.5
180,389 - EX28DRAFT_0230 0.41 -0.3
180,404 - EX28DRAFT_0230 0.41 -0.9
180,478 - EX28DRAFT_0230 0.45 -1.3
180,496 + EX28DRAFT_0230 0.46 -0.4
180,525 + EX28DRAFT_0230 0.47 -2.3
180,525 + EX28DRAFT_0230 0.47 -1.8
180,681 - EX28DRAFT_0230 0.54 +1.4
180,718 - EX28DRAFT_0230 0.56 +0.1
180,954 + EX28DRAFT_0230 0.67 -1.0
180,986 + EX28DRAFT_0230 0.68 +1.0
181,084 - EX28DRAFT_0230 0.73 -0.6
181,084 - EX28DRAFT_0230 0.73 +1.1
181,126 - EX28DRAFT_0230 0.75 +3.0
181,126 - EX28DRAFT_0230 0.75 +0.3
181,126 - EX28DRAFT_0230 0.75 -0.5
181,126 - EX28DRAFT_0230 0.75 +0.2
181,267 + EX28DRAFT_0230 0.81 +1.0
181,385 + EX28DRAFT_0230 0.87 -0.1
181,385 + EX28DRAFT_0230 0.87 +0.1
181,414 + EX28DRAFT_0230 0.88 -2.2
181,414 + EX28DRAFT_0230 0.88 -0.1
181,415 - EX28DRAFT_0230 0.88 -1.4
181,415 - EX28DRAFT_0230 0.88 -0.7
181,449 + EX28DRAFT_0230 0.90 +0.4
181,449 + EX28DRAFT_0230 0.90 +0.1
181,467 + +1.0
181,467 + -1.8
181,470 + +0.9
181,482 + +2.0
181,483 - +0.7
181,491 + +0.8
181,521 + +0.3
181,612 + -2.0
181,667 - +0.4
181,732 + +1.0
181,733 - +0.2
181,826 - +0.9
181,826 - -0.6
181,841 - EX28DRAFT_0231 0.11 +1.0
181,982 - EX28DRAFT_0231 0.23 -1.0
182,038 - EX28DRAFT_0231 0.27 +5.7
182,071 + EX28DRAFT_0231 0.30 -0.1
182,176 - EX28DRAFT_0231 0.39 -0.2
182,176 - EX28DRAFT_0231 0.39 -0.9
182,176 - EX28DRAFT_0231 0.39 -1.5
182,322 + EX28DRAFT_0231 0.51 +0.4
182,322 + EX28DRAFT_0231 0.51 +1.4
182,322 + EX28DRAFT_0231 0.51 -0.7
182,323 - EX28DRAFT_0231 0.51 -0.5
182,323 - EX28DRAFT_0231 0.51 +0.3
182,323 - EX28DRAFT_0231 0.51 +2.1
182,323 - EX28DRAFT_0231 0.51 +0.5
182,323 - EX28DRAFT_0231 0.51 +0.4
182,323 - EX28DRAFT_0231 0.51 +0.3
182,344 + EX28DRAFT_0231 0.53 +0.4
182,346 + EX28DRAFT_0231 0.53 -1.0
182,346 + EX28DRAFT_0231 0.53 +0.0
182,346 + EX28DRAFT_0231 0.53 +0.6
182,347 - EX28DRAFT_0231 0.53 +0.8
182,347 - EX28DRAFT_0231 0.53 -0.8
182,347 - EX28DRAFT_0231 0.53 +0.8
182,347 - EX28DRAFT_0231 0.53 +0.5
182,347 - EX28DRAFT_0231 0.53 -1.5
182,347 - EX28DRAFT_0231 0.53 -0.5
182,360 - EX28DRAFT_0231 0.55 -2.1
182,400 + EX28DRAFT_0231 0.58 +1.4
182,401 - EX28DRAFT_0231 0.58 +1.2
182,432 - EX28DRAFT_0231 0.61 -1.7
182,438 - EX28DRAFT_0231 0.61 -2.4
182,438 - EX28DRAFT_0231 0.61 -1.5
182,439 + EX28DRAFT_0231 0.61 +0.3

Or see this region's nucleotide sequence