Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0151 and EX28DRAFT_0152 are separated by 11 nucleotides EX28DRAFT_0152 and EX28DRAFT_0153 are separated by 8 nucleotides
EX28DRAFT_0151: EX28DRAFT_0151 - ABC-type sugar transport system, ATPase component, at 96,842 to 98,389
_0151
EX28DRAFT_0152: EX28DRAFT_0152 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 98,401 to 99,429
_0152
EX28DRAFT_0153: EX28DRAFT_0153 - Predicted dehydrogenases and related proteins, at 99,438 to 100,571
_0153
Position (kb) 98
99
100 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 97.408 kb on + strand, within EX28DRAFT_0151 at 97.430 kb on - strand, within EX28DRAFT_0151 at 97.434 kb on - strand, within EX28DRAFT_0151 at 97.434 kb on - strand, within EX28DRAFT_0151 at 97.725 kb on + strand, within EX28DRAFT_0151 at 97.726 kb on - strand, within EX28DRAFT_0151 at 97.726 kb on - strand, within EX28DRAFT_0151 at 97.796 kb on - strand, within EX28DRAFT_0151 at 97.850 kb on + strand, within EX28DRAFT_0151 at 98.556 kb on + strand, within EX28DRAFT_0152 at 98.587 kb on + strand, within EX28DRAFT_0152 at 98.686 kb on + strand, within EX28DRAFT_0152 at 98.964 kb on + strand, within EX28DRAFT_0152 at 98.965 kb on - strand, within EX28DRAFT_0152 at 98.970 kb on + strand, within EX28DRAFT_0152 at 99.044 kb on - strand, within EX28DRAFT_0152 at 99.116 kb on - strand, within EX28DRAFT_0152 at 99.344 kb on - strand at 99.346 kb on + strand at 99.369 kb on - strand at 99.369 kb on - strand at 99.369 kb on - strand at 99.373 kb on - strand at 99.396 kb on + strand at 99.400 kb on + strand at 99.401 kb on - strand at 99.401 kb on - strand at 99.452 kb on + strand at 99.460 kb on + strand at 99.475 kb on - strand at 99.502 kb on - strand at 99.668 kb on + strand, within EX28DRAFT_0153 at 99.736 kb on - strand, within EX28DRAFT_0153 at 99.831 kb on + strand, within EX28DRAFT_0153 at 99.831 kb on + strand, within EX28DRAFT_0153 at 99.832 kb on - strand, within EX28DRAFT_0153 at 99.832 kb on - strand, within EX28DRAFT_0153 at 99.832 kb on - strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.928 kb on - strand, within EX28DRAFT_0153 at 99.928 kb on - strand, within EX28DRAFT_0153 at 99.928 kb on - strand, within EX28DRAFT_0153 at 99.930 kb on - strand, within EX28DRAFT_0153 at 100.231 kb on - strand, within EX28DRAFT_0153 at 100.231 kb on - strand, within EX28DRAFT_0153 at 100.296 kb on + strand, within EX28DRAFT_0153 at 100.296 kb on + strand, within EX28DRAFT_0153 at 100.297 kb on - strand, within EX28DRAFT_0153
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 97,408 + EX28DRAFT_0151 0.37 -0.7 97,430 - EX28DRAFT_0151 0.38 -1.0 97,434 - EX28DRAFT_0151 0.38 -0.0 97,434 - EX28DRAFT_0151 0.38 -3.2 97,725 + EX28DRAFT_0151 0.57 +0.4 97,726 - EX28DRAFT_0151 0.57 -0.6 97,726 - EX28DRAFT_0151 0.57 -0.8 97,796 - EX28DRAFT_0151 0.62 -0.5 97,850 + EX28DRAFT_0151 0.65 -0.7 98,556 + EX28DRAFT_0152 0.15 -1.0 98,587 + EX28DRAFT_0152 0.18 -3.2 98,686 + EX28DRAFT_0152 0.28 -0.5 98,964 + EX28DRAFT_0152 0.55 -2.8 98,965 - EX28DRAFT_0152 0.55 -0.1 98,970 + EX28DRAFT_0152 0.55 +0.6 99,044 - EX28DRAFT_0152 0.62 +0.8 99,116 - EX28DRAFT_0152 0.69 -4.3 99,344 - -3.0 99,346 + -0.3 99,369 - -0.3 99,369 - -2.3 99,369 - -0.5 99,373 - +0.2 99,396 + -1.5 99,400 + -1.1 99,401 - -0.6 99,401 - -0.4 99,452 + -1.2 99,460 + -1.7 99,475 - -1.4 99,502 - -1.6 99,668 + EX28DRAFT_0153 0.20 -0.3 99,736 - EX28DRAFT_0153 0.26 -2.6 99,831 + EX28DRAFT_0153 0.35 -0.2 99,831 + EX28DRAFT_0153 0.35 -0.3 99,832 - EX28DRAFT_0153 0.35 -2.4 99,832 - EX28DRAFT_0153 0.35 -1.0 99,832 - EX28DRAFT_0153 0.35 -0.4 99,927 + EX28DRAFT_0153 0.43 +0.9 99,927 + EX28DRAFT_0153 0.43 -0.1 99,927 + EX28DRAFT_0153 0.43 +0.2 99,927 + EX28DRAFT_0153 0.43 +4.5 99,927 + EX28DRAFT_0153 0.43 -0.6 99,927 + EX28DRAFT_0153 0.43 +0.4 99,928 - EX28DRAFT_0153 0.43 +0.1 99,928 - EX28DRAFT_0153 0.43 -0.6 99,928 - EX28DRAFT_0153 0.43 +0.9 99,930 - EX28DRAFT_0153 0.43 -0.5 100,231 - EX28DRAFT_0153 0.70 -1.2 100,231 - EX28DRAFT_0153 0.70 -1.7 100,296 + EX28DRAFT_0153 0.76 -0.5 100,296 + EX28DRAFT_0153 0.76 +0.9 100,297 - EX28DRAFT_0153 0.76 -1.2
Or see this region's nucleotide sequence