Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0048

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0046 and EX28DRAFT_0047 overlap by 4 nucleotidesEX28DRAFT_0047 and EX28DRAFT_0048 overlap by 25 nucleotidesEX28DRAFT_0048 and EX28DRAFT_0049 are separated by 491 nucleotides EX28DRAFT_0046: EX28DRAFT_0046 - shikimate dehydrogenase, at 24,721 to 25,539 _0046 EX28DRAFT_0047: EX28DRAFT_0047 - Protein of unknown function (DUF1488), at 25,536 to 25,784 _0047 EX28DRAFT_0048: EX28DRAFT_0048 - Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily, at 25,760 to 26,314 _0048 EX28DRAFT_0049: EX28DRAFT_0049 - 16S, at 26,806 to 26,889 _0049 Position (kb) 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 24.817 kb on + strand, within EX28DRAFT_0046at 24.818 kb on - strand, within EX28DRAFT_0046at 24.850 kb on - strand, within EX28DRAFT_0046at 25.122 kb on - strand, within EX28DRAFT_0046at 25.341 kb on + strand, within EX28DRAFT_0046at 25.345 kb on + strand, within EX28DRAFT_0046at 25.346 kb on - strand, within EX28DRAFT_0046at 25.628 kb on + strand, within EX28DRAFT_0047at 25.628 kb on + strand, within EX28DRAFT_0047at 25.629 kb on - strand, within EX28DRAFT_0047at 25.690 kb on + strand, within EX28DRAFT_0047at 25.791 kb on + strandat 25.807 kb on + strandat 25.812 kb on + strandat 25.812 kb on + strandat 25.812 kb on + strandat 25.813 kb on - strandat 25.897 kb on - strand, within EX28DRAFT_0048at 25.897 kb on - strand, within EX28DRAFT_0048at 25.925 kb on + strand, within EX28DRAFT_0048at 25.950 kb on - strand, within EX28DRAFT_0048at 25.961 kb on + strand, within EX28DRAFT_0048at 25.961 kb on + strand, within EX28DRAFT_0048at 25.961 kb on + strand, within EX28DRAFT_0048at 25.962 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 26.094 kb on + strand, within EX28DRAFT_0048at 26.094 kb on + strand, within EX28DRAFT_0048at 26.137 kb on + strand, within EX28DRAFT_0048at 26.163 kb on + strand, within EX28DRAFT_0048at 26.163 kb on + strand, within EX28DRAFT_0048at 26.163 kb on + strand, within EX28DRAFT_0048at 26.164 kb on - strand, within EX28DRAFT_0048at 26.164 kb on - strand, within EX28DRAFT_0048at 26.167 kb on + strand, within EX28DRAFT_0048at 26.168 kb on - strand, within EX28DRAFT_0048at 26.290 kb on + strandat 26.290 kb on + strandat 26.292 kb on + strandat 26.292 kb on + strandat 26.292 kb on + strandat 26.300 kb on + strandat 26.300 kb on + strandat 26.300 kb on + strandat 26.301 kb on - strandat 26.301 kb on - strandat 26.314 kb on + strandat 26.314 kb on + strandat 26.314 kb on + strandat 26.314 kb on + strandat 26.315 kb on - strandat 26.315 kb on - strandat 26.318 kb on + strandat 26.318 kb on + strandat 26.318 kb on + strandat 26.318 kb on + strandat 26.319 kb on - strandat 26.319 kb on - strandat 26.357 kb on + strandat 26.361 kb on - strandat 26.391 kb on + strandat 26.396 kb on - strandat 26.489 kb on + strandat 26.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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24,817 + EX28DRAFT_0046 0.12 -0.2
24,818 - EX28DRAFT_0046 0.12 +2.2
24,850 - EX28DRAFT_0046 0.16 -1.3
25,122 - EX28DRAFT_0046 0.49 +0.4
25,341 + EX28DRAFT_0046 0.76 +0.4
25,345 + EX28DRAFT_0046 0.76 -0.8
25,346 - EX28DRAFT_0046 0.76 +0.6
25,628 + EX28DRAFT_0047 0.37 +3.4
25,628 + EX28DRAFT_0047 0.37 -2.0
25,629 - EX28DRAFT_0047 0.37 +0.2
25,690 + EX28DRAFT_0047 0.62 -0.2
25,791 + +0.4
25,807 + -2.1
25,812 + -0.9
25,812 + +0.2
25,812 + +0.9
25,813 - +0.7
25,897 - EX28DRAFT_0048 0.25 +0.5
25,897 - EX28DRAFT_0048 0.25 -0.1
25,925 + EX28DRAFT_0048 0.30 -3.0
25,950 - EX28DRAFT_0048 0.34 +0.3
25,961 + EX28DRAFT_0048 0.36 -3.0
25,961 + EX28DRAFT_0048 0.36 +1.3
25,961 + EX28DRAFT_0048 0.36 -1.2
25,962 - EX28DRAFT_0048 0.36 -0.4
25,965 - EX28DRAFT_0048 0.37 +2.4
25,965 - EX28DRAFT_0048 0.37 +0.0
25,965 - EX28DRAFT_0048 0.37 +0.9
25,965 - EX28DRAFT_0048 0.37 -0.6
25,965 - EX28DRAFT_0048 0.37 +0.6
26,094 + EX28DRAFT_0048 0.60 -0.2
26,094 + EX28DRAFT_0048 0.60 -2.0
26,137 + EX28DRAFT_0048 0.68 -2.6
26,163 + EX28DRAFT_0048 0.73 +0.8
26,163 + EX28DRAFT_0048 0.73 -0.5
26,163 + EX28DRAFT_0048 0.73 -2.5
26,164 - EX28DRAFT_0048 0.73 -0.6
26,164 - EX28DRAFT_0048 0.73 +0.6
26,167 + EX28DRAFT_0048 0.73 -0.5
26,168 - EX28DRAFT_0048 0.74 -0.1
26,290 + -0.7
26,290 + -2.3
26,292 + +0.8
26,292 + +1.0
26,292 + +0.4
26,300 + +1.0
26,300 + +0.1
26,300 + -0.7
26,301 - +1.2
26,301 - +0.1
26,314 + -1.6
26,314 + +0.8
26,314 + +0.7
26,314 + -0.3
26,315 - -0.3
26,315 - +2.0
26,318 + -1.8
26,318 + -0.7
26,318 + +1.8
26,318 + +0.9
26,319 - -0.3
26,319 - -0.1
26,357 + -0.5
26,361 - -0.4
26,391 + +0.7
26,396 - -0.7
26,489 + +0.3
26,489 + -0.1

Or see this region's nucleotide sequence