Strain Fitness in Escherichia coli BL21 around ECD_r00015

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_r00014 and ECD_t00071 are separated by 68 nucleotidesECD_t00071 and ECD_t00072 are separated by 42 nucleotidesECD_t00072 and ECD_r00015 are separated by 183 nucleotidesECD_r00015 and ECD_r00016 are separated by 186 nucleotidesECD_r00016 and ECD_03742 are separated by 101 nucleotidesECD_03742 and ECD_03743 overlap by 19 nucleotides ECD_r00014: ECD_r00014 - 16S ribosomal RNA, at 3,942,344 to 3,943,885 _r00014 ECD_t00071: ECD_t00071 - tRNA-Ile, at 3,943,954 to 3,944,030 _t00071 ECD_t00072: ECD_t00072 - tRNA-Ala, at 3,944,073 to 3,944,148 _t00072 ECD_r00015: ECD_r00015 - 23S ribosomal RNA, at 3,944,332 to 3,947,235 _r00015 ECD_r00016: ECD_r00016 - 5S ribosomal RNA, at 3,947,422 to 3,947,541 _r00016 ECD_03742: ECD_03742 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 3,947,643 to 3,948,170 _03742 ECD_03743: ECD_03743 - molybdopterin-guanine dinucleotide synthase, at 3,948,152 to 3,948,736 _03743 Position (kb) 3944 3945 3946 3947 3948Strain fitness (log2 ratio) -2 -1 0 1at 3946.047 kb on + strand, within ECD_r00015at 3946.047 kb on + strand, within ECD_r00015at 3946.047 kb on + strand, within ECD_r00015at 3946.449 kb on + strand, within ECD_r00015at 3946.449 kb on + strand, within ECD_r00015at 3946.462 kb on + strand, within ECD_r00015at 3946.503 kb on + strand, within ECD_r00015at 3946.503 kb on + strand, within ECD_r00015at 3946.513 kb on + strand, within ECD_r00015at 3946.528 kb on + strand, within ECD_r00015at 3946.528 kb on + strand, within ECD_r00015at 3947.634 kb on + strandat 3947.634 kb on + strandat 3947.702 kb on + strand, within ECD_03742at 3947.702 kb on + strand, within ECD_03742at 3947.703 kb on - strand, within ECD_03742at 3947.703 kb on - strand, within ECD_03742at 3947.757 kb on - strand, within ECD_03742at 3947.757 kb on - strand, within ECD_03742at 3947.901 kb on + strand, within ECD_03742at 3947.998 kb on + strand, within ECD_03742at 3947.998 kb on + strand, within ECD_03742at 3947.998 kb on + strand, within ECD_03742at 3947.999 kb on - strand, within ECD_03742at 3947.999 kb on - strand, within ECD_03742at 3947.999 kb on - strand, within ECD_03742at 3948.003 kb on - strand, within ECD_03742at 3948.003 kb on - strand, within ECD_03742at 3948.041 kb on + strand, within ECD_03742at 3948.042 kb on - strand, within ECD_03742at 3948.048 kb on - strand, within ECD_03742at 3948.048 kb on - strand, within ECD_03742at 3948.107 kb on + strand, within ECD_03742at 3948.191 kb on - strandat 3948.214 kb on + strand, within ECD_03743

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,946,047 + ECD_r00015 0.59 +1.2
3,946,047 + ECD_r00015 0.59 -1.0
3,946,047 + ECD_r00015 0.59 +1.2
3,946,449 + ECD_r00015 0.73 -0.5
3,946,449 + ECD_r00015 0.73 -1.0
3,946,462 + ECD_r00015 0.73 -0.6
3,946,503 + ECD_r00015 0.75 +0.1
3,946,503 + ECD_r00015 0.75 -0.2
3,946,513 + ECD_r00015 0.75 -0.6
3,946,528 + ECD_r00015 0.76 -1.9
3,946,528 + ECD_r00015 0.76 -1.4
3,947,634 + +0.9
3,947,634 + +1.0
3,947,702 + ECD_03742 0.11 -0.1
3,947,702 + ECD_03742 0.11 -0.2
3,947,703 - ECD_03742 0.11 -0.6
3,947,703 - ECD_03742 0.11 +0.3
3,947,757 - ECD_03742 0.22 -1.6
3,947,757 - ECD_03742 0.22 +0.1
3,947,901 + ECD_03742 0.49 -0.1
3,947,998 + ECD_03742 0.67 -0.2
3,947,998 + ECD_03742 0.67 +1.2
3,947,998 + ECD_03742 0.67 +0.3
3,947,999 - ECD_03742 0.67 +0.9
3,947,999 - ECD_03742 0.67 -1.2
3,947,999 - ECD_03742 0.67 -0.2
3,948,003 - ECD_03742 0.68 -0.1
3,948,003 - ECD_03742 0.68 -0.8
3,948,041 + ECD_03742 0.75 -0.5
3,948,042 - ECD_03742 0.76 +0.1
3,948,048 - ECD_03742 0.77 -0.3
3,948,048 - ECD_03742 0.77 +0.2
3,948,107 + ECD_03742 0.88 -0.6
3,948,191 - +0.4
3,948,214 + ECD_03743 0.11 -0.2

Or see this region's nucleotide sequence