Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_r00014 and ECD_t00071 are separated by 68 nucleotides ECD_t00071 and ECD_t00072 are separated by 42 nucleotides ECD_t00072 and ECD_r00015 are separated by 183 nucleotides ECD_r00015 and ECD_r00016 are separated by 186 nucleotides ECD_r00016 and ECD_03742 are separated by 101 nucleotides ECD_03742 and ECD_03743 overlap by 19 nucleotides
ECD_r00014: ECD_r00014 - 16S ribosomal RNA, at 3,942,344 to 3,943,885
_r00014
ECD_t00071: ECD_t00071 - tRNA-Ile, at 3,943,954 to 3,944,030
_t00071
ECD_t00072: ECD_t00072 - tRNA-Ala, at 3,944,073 to 3,944,148
_t00072
ECD_r00015: ECD_r00015 - 23S ribosomal RNA, at 3,944,332 to 3,947,235
_r00015
ECD_r00016: ECD_r00016 - 5S ribosomal RNA, at 3,947,422 to 3,947,541
_r00016
ECD_03742: ECD_03742 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 3,947,643 to 3,948,170
_03742
ECD_03743: ECD_03743 - molybdopterin-guanine dinucleotide synthase, at 3,948,152 to 3,948,736
_03743
Position (kb)
3944
3945
3946
3947
3948 Strain fitness (log2 ratio)
-2
-1
0
1 at 3946.047 kb on + strand, within ECD_r00015 at 3946.047 kb on + strand, within ECD_r00015 at 3946.047 kb on + strand, within ECD_r00015 at 3946.449 kb on + strand, within ECD_r00015 at 3946.449 kb on + strand, within ECD_r00015 at 3946.462 kb on + strand, within ECD_r00015 at 3946.503 kb on + strand, within ECD_r00015 at 3946.503 kb on + strand, within ECD_r00015 at 3946.513 kb on + strand, within ECD_r00015 at 3946.528 kb on + strand, within ECD_r00015 at 3946.528 kb on + strand, within ECD_r00015 at 3947.634 kb on + strand at 3947.634 kb on + strand at 3947.702 kb on + strand, within ECD_03742 at 3947.702 kb on + strand, within ECD_03742 at 3947.703 kb on - strand, within ECD_03742 at 3947.703 kb on - strand, within ECD_03742 at 3947.757 kb on - strand, within ECD_03742 at 3947.757 kb on - strand, within ECD_03742 at 3947.901 kb on + strand, within ECD_03742 at 3947.998 kb on + strand, within ECD_03742 at 3947.998 kb on + strand, within ECD_03742 at 3947.998 kb on + strand, within ECD_03742 at 3947.999 kb on - strand, within ECD_03742 at 3947.999 kb on - strand, within ECD_03742 at 3947.999 kb on - strand, within ECD_03742 at 3948.003 kb on - strand, within ECD_03742 at 3948.003 kb on - strand, within ECD_03742 at 3948.041 kb on + strand, within ECD_03742 at 3948.042 kb on - strand, within ECD_03742 at 3948.048 kb on - strand, within ECD_03742 at 3948.048 kb on - strand, within ECD_03742 at 3948.107 kb on + strand, within ECD_03742 at 3948.191 kb on - strand at 3948.214 kb on + strand, within ECD_03743
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,946,047 + ECD_r00015 0.59 +1.2 3,946,047 + ECD_r00015 0.59 -1.0 3,946,047 + ECD_r00015 0.59 +1.2 3,946,449 + ECD_r00015 0.73 -0.5 3,946,449 + ECD_r00015 0.73 -1.0 3,946,462 + ECD_r00015 0.73 -0.6 3,946,503 + ECD_r00015 0.75 +0.1 3,946,503 + ECD_r00015 0.75 -0.2 3,946,513 + ECD_r00015 0.75 -0.6 3,946,528 + ECD_r00015 0.76 -1.9 3,946,528 + ECD_r00015 0.76 -1.4 3,947,634 + +0.9 3,947,634 + +1.0 3,947,702 + ECD_03742 0.11 -0.1 3,947,702 + ECD_03742 0.11 -0.2 3,947,703 - ECD_03742 0.11 -0.6 3,947,703 - ECD_03742 0.11 +0.3 3,947,757 - ECD_03742 0.22 -1.6 3,947,757 - ECD_03742 0.22 +0.1 3,947,901 + ECD_03742 0.49 -0.1 3,947,998 + ECD_03742 0.67 -0.2 3,947,998 + ECD_03742 0.67 +1.2 3,947,998 + ECD_03742 0.67 +0.3 3,947,999 - ECD_03742 0.67 +0.9 3,947,999 - ECD_03742 0.67 -1.2 3,947,999 - ECD_03742 0.67 -0.2 3,948,003 - ECD_03742 0.68 -0.1 3,948,003 - ECD_03742 0.68 -0.8 3,948,041 + ECD_03742 0.75 -0.5 3,948,042 - ECD_03742 0.76 +0.1 3,948,048 - ECD_03742 0.77 -0.3 3,948,048 - ECD_03742 0.77 +0.2 3,948,107 + ECD_03742 0.88 -0.6 3,948,191 - +0.4 3,948,214 + ECD_03743 0.11 -0.2
Or see this region's nucleotide sequence