Strain Fitness in Escherichia coli BL21 around ECD_04247

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04246 and ECD_04247 are separated by 102 nucleotidesECD_04247 and ECD_04248 overlap by 32 nucleotidesECD_04248 and ECD_04249 are separated by 14 nucleotides ECD_04246: ECD_04246 - 16S rRNA m(2)G1207 methyltransferase, SAM-dependent, at 4,525,044 to 4,526,075 _04246 ECD_04247: ECD_04247 - DNA polymerase III, psi subunit, at 4,526,178 to 4,526,591 _04247 ECD_04248: ECD_04248 - ribosomal-protein-S18-alanine N-acetyltransferase, at 4,526,560 to 4,527,006 _04248 ECD_04249: ECD_04249 - dUMP phosphatase, at 4,527,021 to 4,527,698 _04249 Position (kb) 4526 4527Strain fitness (log2 ratio) -2 -1 0 1at 4525.193 kb on + strand, within ECD_04246at 4525.196 kb on + strand, within ECD_04246at 4525.197 kb on - strand, within ECD_04246at 4525.287 kb on - strand, within ECD_04246at 4525.378 kb on - strand, within ECD_04246at 4525.648 kb on + strand, within ECD_04246at 4525.649 kb on - strand, within ECD_04246at 4525.649 kb on - strand, within ECD_04246at 4525.649 kb on - strand, within ECD_04246at 4525.755 kb on - strand, within ECD_04246at 4525.831 kb on + strand, within ECD_04246at 4525.831 kb on + strand, within ECD_04246at 4525.831 kb on + strand, within ECD_04246at 4525.832 kb on - strand, within ECD_04246at 4525.911 kb on + strand, within ECD_04246at 4525.911 kb on + strand, within ECD_04246at 4525.912 kb on - strand, within ECD_04246at 4525.914 kb on + strand, within ECD_04246at 4525.989 kb on + strandat 4526.064 kb on - strandat 4526.095 kb on - strandat 4526.107 kb on + strandat 4526.109 kb on + strandat 4526.110 kb on - strandat 4526.110 kb on - strandat 4526.115 kb on + strandat 4526.115 kb on + strandat 4526.115 kb on + strandat 4526.115 kb on + strandat 4526.115 kb on + strandat 4526.115 kb on + strandat 4526.116 kb on - strandat 4526.116 kb on - strandat 4526.116 kb on - strandat 4526.116 kb on - strandat 4526.116 kb on - strandat 4526.116 kb on - strandat 4526.116 kb on - strandat 4526.116 kb on - strandat 4526.145 kb on + strandat 4526.177 kb on + strandat 4526.559 kb on + strandat 4526.559 kb on + strandat 4526.559 kb on + strandat 4526.560 kb on - strandat 4526.560 kb on - strandat 4526.751 kb on + strand, within ECD_04248at 4526.751 kb on + strand, within ECD_04248at 4526.751 kb on + strand, within ECD_04248at 4526.752 kb on - strand, within ECD_04248at 4526.752 kb on - strand, within ECD_04248at 4526.752 kb on - strand, within ECD_04248at 4526.752 kb on - strand, within ECD_04248at 4526.858 kb on + strand, within ECD_04248at 4526.902 kb on + strand, within ECD_04248at 4526.902 kb on + strand, within ECD_04248at 4526.944 kb on + strand, within ECD_04248at 4526.945 kb on - strand, within ECD_04248at 4527.001 kb on - strandat 4527.001 kb on - strandat 4527.004 kb on + strandat 4527.004 kb on + strandat 4527.004 kb on + strandat 4527.004 kb on + strandat 4527.005 kb on - strandat 4527.005 kb on - strandat 4527.007 kb on + strandat 4527.007 kb on + strandat 4527.007 kb on + strandat 4527.007 kb on + strandat 4527.008 kb on - strandat 4527.008 kb on - strandat 4527.020 kb on - strandat 4527.144 kb on + strand, within ECD_04249at 4527.202 kb on + strand, within ECD_04249at 4527.278 kb on + strand, within ECD_04249at 4527.282 kb on - strand, within ECD_04249at 4527.380 kb on + strand, within ECD_04249at 4527.426 kb on + strand, within ECD_04249at 4527.426 kb on + strand, within ECD_04249at 4527.427 kb on - strand, within ECD_04249at 4527.476 kb on + strand, within ECD_04249

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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4,525,193 + ECD_04246 0.14 -0.4
4,525,196 + ECD_04246 0.15 -0.6
4,525,197 - ECD_04246 0.15 +0.0
4,525,287 - ECD_04246 0.24 -2.5
4,525,378 - ECD_04246 0.32 +0.4
4,525,648 + ECD_04246 0.59 +0.0
4,525,649 - ECD_04246 0.59 -0.3
4,525,649 - ECD_04246 0.59 -0.1
4,525,649 - ECD_04246 0.59 -1.8
4,525,755 - ECD_04246 0.69 -0.4
4,525,831 + ECD_04246 0.76 +0.0
4,525,831 + ECD_04246 0.76 -1.7
4,525,831 + ECD_04246 0.76 -0.0
4,525,832 - ECD_04246 0.76 -1.2
4,525,911 + ECD_04246 0.84 +0.1
4,525,911 + ECD_04246 0.84 +0.7
4,525,912 - ECD_04246 0.84 +0.4
4,525,914 + ECD_04246 0.84 -1.2
4,525,989 + -0.1
4,526,064 - +0.3
4,526,095 - +0.1
4,526,107 + +0.5
4,526,109 + +0.3
4,526,110 - +0.1
4,526,110 - -0.8
4,526,115 + -0.6
4,526,115 + -0.4
4,526,115 + +0.3
4,526,115 + -0.1
4,526,115 + +0.1
4,526,115 + +0.0
4,526,116 - +0.2
4,526,116 - +0.7
4,526,116 - +0.6
4,526,116 - +0.6
4,526,116 - +0.2
4,526,116 - +0.6
4,526,116 - +0.7
4,526,116 - +0.7
4,526,145 + +0.4
4,526,177 + -1.2
4,526,559 + -0.0
4,526,559 + +0.1
4,526,559 + +1.1
4,526,560 - +0.7
4,526,560 - +0.0
4,526,751 + ECD_04248 0.43 +1.1
4,526,751 + ECD_04248 0.43 +0.1
4,526,751 + ECD_04248 0.43 +1.2
4,526,752 - ECD_04248 0.43 +0.5
4,526,752 - ECD_04248 0.43 -1.1
4,526,752 - ECD_04248 0.43 +0.5
4,526,752 - ECD_04248 0.43 +1.3
4,526,858 + ECD_04248 0.67 +0.8
4,526,902 + ECD_04248 0.77 +0.7
4,526,902 + ECD_04248 0.77 +0.1
4,526,944 + ECD_04248 0.86 +0.8
4,526,945 - ECD_04248 0.86 -0.4
4,527,001 - -0.6
4,527,001 - +0.1
4,527,004 + -0.5
4,527,004 + +1.1
4,527,004 + +1.5
4,527,004 + +0.6
4,527,005 - +0.4
4,527,005 - -0.5
4,527,007 + -0.1
4,527,007 + -0.3
4,527,007 + +0.2
4,527,007 + +0.4
4,527,008 - -0.6
4,527,008 - +1.0
4,527,020 - +0.6
4,527,144 + ECD_04249 0.18 +0.1
4,527,202 + ECD_04249 0.27 -0.1
4,527,278 + ECD_04249 0.38 -0.5
4,527,282 - ECD_04249 0.38 -0.1
4,527,380 + ECD_04249 0.53 -1.5
4,527,426 + ECD_04249 0.60 +0.6
4,527,426 + ECD_04249 0.60 +0.2
4,527,427 - ECD_04249 0.60 -0.0
4,527,476 + ECD_04249 0.67 -0.5

Or see this region's nucleotide sequence