Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04220 and ECD_04221 are separated by 392 nucleotides ECD_04221 and ECD_04222 are separated by 17 nucleotides
ECD_04220: ECD_04220 - putative transporter, at 4,496,245 to 4,498,395
_04220
ECD_04221: ECD_04221 - 4-hydroxyphenylacetate 3-monooxygenase, reductase component, at 4,498,788 to 4,499,300
_04221
ECD_04222: ECD_04222 - 4-hydroxyphenylacetate 3-monooxygenase, at 4,499,318 to 4,500,880
_04222
Position (kb)
4498
4499
4500 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4497.884 kb on - strand, within ECD_04220 at 4497.978 kb on + strand, within ECD_04220 at 4497.991 kb on - strand, within ECD_04220 at 4497.991 kb on - strand, within ECD_04220 at 4498.001 kb on - strand, within ECD_04220 at 4498.226 kb on + strand at 4498.227 kb on - strand at 4498.227 kb on - strand at 4498.227 kb on - strand at 4498.227 kb on - strand at 4498.257 kb on - strand at 4498.312 kb on + strand at 4498.313 kb on - strand at 4498.367 kb on - strand at 4498.396 kb on - strand at 4498.414 kb on - strand at 4498.433 kb on - strand at 4498.470 kb on + strand at 4498.471 kb on - strand at 4498.478 kb on + strand at 4498.478 kb on + strand at 4498.478 kb on + strand at 4498.478 kb on + strand at 4498.479 kb on - strand at 4498.479 kb on - strand at 4498.479 kb on - strand at 4498.479 kb on - strand at 4498.479 kb on - strand at 4498.479 kb on - strand at 4498.529 kb on + strand at 4498.535 kb on - strand at 4498.549 kb on - strand at 4498.564 kb on + strand at 4498.589 kb on + strand at 4498.626 kb on + strand at 4498.627 kb on - strand at 4498.642 kb on - strand at 4498.647 kb on - strand at 4498.647 kb on - strand at 4498.663 kb on - strand at 4498.676 kb on - strand at 4498.789 kb on + strand at 4498.789 kb on + strand at 4498.840 kb on + strand, within ECD_04221 at 4498.841 kb on - strand, within ECD_04221 at 4498.841 kb on - strand, within ECD_04221 at 4498.841 kb on - strand, within ECD_04221 at 4498.841 kb on - strand, within ECD_04221 at 4498.841 kb on - strand, within ECD_04221 at 4498.841 kb on - strand, within ECD_04221 at 4498.844 kb on + strand, within ECD_04221 at 4498.845 kb on - strand, within ECD_04221 at 4498.845 kb on - strand, within ECD_04221 at 4498.845 kb on - strand, within ECD_04221 at 4498.845 kb on - strand, within ECD_04221 at 4498.963 kb on - strand, within ECD_04221 at 4499.165 kb on + strand, within ECD_04221 at 4499.234 kb on + strand, within ECD_04221 at 4499.235 kb on - strand, within ECD_04221 at 4499.293 kb on - strand at 4499.293 kb on - strand at 4499.499 kb on + strand, within ECD_04222 at 4499.511 kb on + strand, within ECD_04222 at 4499.512 kb on - strand, within ECD_04222 at 4499.512 kb on - strand, within ECD_04222 at 4499.512 kb on - strand, within ECD_04222 at 4499.546 kb on - strand, within ECD_04222 at 4499.613 kb on + strand, within ECD_04222 at 4499.613 kb on + strand, within ECD_04222 at 4499.613 kb on + strand, within ECD_04222 at 4499.613 kb on + strand, within ECD_04222 at 4499.613 kb on + strand, within ECD_04222 at 4499.614 kb on - strand, within ECD_04222 at 4499.614 kb on - strand, within ECD_04222 at 4499.614 kb on - strand, within ECD_04222 at 4499.614 kb on - strand, within ECD_04222 at 4499.614 kb on - strand, within ECD_04222 at 4499.614 kb on - strand, within ECD_04222 at 4499.626 kb on - strand, within ECD_04222 at 4499.626 kb on - strand, within ECD_04222 at 4499.673 kb on + strand, within ECD_04222 at 4499.741 kb on + strand, within ECD_04222 at 4499.778 kb on + strand, within ECD_04222 at 4499.778 kb on + strand, within ECD_04222 at 4499.779 kb on - strand, within ECD_04222 at 4499.903 kb on - strand, within ECD_04222 at 4499.903 kb on - strand, within ECD_04222 at 4499.983 kb on + strand, within ECD_04222 at 4499.983 kb on + strand, within ECD_04222 at 4500.273 kb on + strand, within ECD_04222 at 4500.274 kb on - strand, within ECD_04222
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 4,497,884 - ECD_04220 0.76 +0.6 4,497,978 + ECD_04220 0.81 -0.5 4,497,991 - ECD_04220 0.81 -0.1 4,497,991 - ECD_04220 0.81 +0.2 4,498,001 - ECD_04220 0.82 -1.9 4,498,226 + +0.8 4,498,227 - +1.1 4,498,227 - +3.2 4,498,227 - -0.7 4,498,227 - +0.6 4,498,257 - +0.9 4,498,312 + -0.8 4,498,313 - +0.5 4,498,367 - +0.9 4,498,396 - -0.2 4,498,414 - +0.3 4,498,433 - +0.3 4,498,470 + -0.1 4,498,471 - -1.8 4,498,478 + +0.3 4,498,478 + +0.6 4,498,478 + -0.2 4,498,478 + +0.3 4,498,479 - +0.5 4,498,479 - +0.3 4,498,479 - -0.3 4,498,479 - +0.2 4,498,479 - +0.0 4,498,479 - -0.2 4,498,529 + +0.0 4,498,535 - -0.3 4,498,549 - -0.6 4,498,564 + +0.5 4,498,589 + -0.5 4,498,626 + +0.5 4,498,627 - +0.1 4,498,642 - +0.3 4,498,647 - +0.8 4,498,647 - -0.0 4,498,663 - -0.0 4,498,676 - -3.1 4,498,789 + -1.1 4,498,789 + -0.2 4,498,840 + ECD_04221 0.10 -0.4 4,498,841 - ECD_04221 0.10 +1.0 4,498,841 - ECD_04221 0.10 -0.7 4,498,841 - ECD_04221 0.10 -0.5 4,498,841 - ECD_04221 0.10 -1.0 4,498,841 - ECD_04221 0.10 -0.1 4,498,841 - ECD_04221 0.10 -0.4 4,498,844 + ECD_04221 0.11 +1.0 4,498,845 - ECD_04221 0.11 +0.4 4,498,845 - ECD_04221 0.11 +1.3 4,498,845 - ECD_04221 0.11 +0.6 4,498,845 - ECD_04221 0.11 +0.8 4,498,963 - ECD_04221 0.34 -1.4 4,499,165 + ECD_04221 0.73 +1.3 4,499,234 + ECD_04221 0.87 +0.3 4,499,235 - ECD_04221 0.87 -0.9 4,499,293 - -0.2 4,499,293 - -0.2 4,499,499 + ECD_04222 0.12 +0.3 4,499,511 + ECD_04222 0.12 +0.1 4,499,512 - ECD_04222 0.12 +0.9 4,499,512 - ECD_04222 0.12 -0.2 4,499,512 - ECD_04222 0.12 +0.7 4,499,546 - ECD_04222 0.15 +0.5 4,499,613 + ECD_04222 0.19 -0.7 4,499,613 + ECD_04222 0.19 -0.2 4,499,613 + ECD_04222 0.19 +0.1 4,499,613 + ECD_04222 0.19 +0.2 4,499,613 + ECD_04222 0.19 -0.2 4,499,614 - ECD_04222 0.19 +0.0 4,499,614 - ECD_04222 0.19 +0.9 4,499,614 - ECD_04222 0.19 +0.8 4,499,614 - ECD_04222 0.19 -0.2 4,499,614 - ECD_04222 0.19 +0.2 4,499,614 - ECD_04222 0.19 -0.2 4,499,626 - ECD_04222 0.20 +1.3 4,499,626 - ECD_04222 0.20 -0.4 4,499,673 + ECD_04222 0.23 +0.2 4,499,741 + ECD_04222 0.27 +0.4 4,499,778 + ECD_04222 0.29 +0.7 4,499,778 + ECD_04222 0.29 +0.1 4,499,779 - ECD_04222 0.29 -0.7 4,499,903 - ECD_04222 0.37 -0.3 4,499,903 - ECD_04222 0.37 -0.6 4,499,983 + ECD_04222 0.43 -0.3 4,499,983 + ECD_04222 0.43 +0.1 4,500,273 + ECD_04222 0.61 +0.1 4,500,274 - ECD_04222 0.61 -2.0
Or see this region's nucleotide sequence