Strain Fitness in Escherichia coli BL21 around ECD_04221

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04220 and ECD_04221 are separated by 392 nucleotidesECD_04221 and ECD_04222 are separated by 17 nucleotides ECD_04220: ECD_04220 - putative transporter, at 4,496,245 to 4,498,395 _04220 ECD_04221: ECD_04221 - 4-hydroxyphenylacetate 3-monooxygenase, reductase component, at 4,498,788 to 4,499,300 _04221 ECD_04222: ECD_04222 - 4-hydroxyphenylacetate 3-monooxygenase, at 4,499,318 to 4,500,880 _04222 Position (kb) 4498 4499 4500Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4497.884 kb on - strand, within ECD_04220at 4497.978 kb on + strand, within ECD_04220at 4497.991 kb on - strand, within ECD_04220at 4497.991 kb on - strand, within ECD_04220at 4498.001 kb on - strand, within ECD_04220at 4498.226 kb on + strandat 4498.227 kb on - strandat 4498.227 kb on - strandat 4498.227 kb on - strandat 4498.227 kb on - strandat 4498.257 kb on - strandat 4498.312 kb on + strandat 4498.313 kb on - strandat 4498.367 kb on - strandat 4498.396 kb on - strandat 4498.414 kb on - strandat 4498.433 kb on - strandat 4498.470 kb on + strandat 4498.471 kb on - strandat 4498.478 kb on + strandat 4498.478 kb on + strandat 4498.478 kb on + strandat 4498.478 kb on + strandat 4498.479 kb on - strandat 4498.479 kb on - strandat 4498.479 kb on - strandat 4498.479 kb on - strandat 4498.479 kb on - strandat 4498.479 kb on - strandat 4498.529 kb on + strandat 4498.535 kb on - strandat 4498.549 kb on - strandat 4498.564 kb on + strandat 4498.589 kb on + strandat 4498.626 kb on + strandat 4498.627 kb on - strandat 4498.642 kb on - strandat 4498.647 kb on - strandat 4498.647 kb on - strandat 4498.663 kb on - strandat 4498.676 kb on - strandat 4498.789 kb on + strandat 4498.789 kb on + strandat 4498.840 kb on + strand, within ECD_04221at 4498.841 kb on - strand, within ECD_04221at 4498.841 kb on - strand, within ECD_04221at 4498.841 kb on - strand, within ECD_04221at 4498.841 kb on - strand, within ECD_04221at 4498.841 kb on - strand, within ECD_04221at 4498.841 kb on - strand, within ECD_04221at 4498.844 kb on + strand, within ECD_04221at 4498.845 kb on - strand, within ECD_04221at 4498.845 kb on - strand, within ECD_04221at 4498.845 kb on - strand, within ECD_04221at 4498.845 kb on - strand, within ECD_04221at 4498.963 kb on - strand, within ECD_04221at 4499.165 kb on + strand, within ECD_04221at 4499.234 kb on + strand, within ECD_04221at 4499.235 kb on - strand, within ECD_04221at 4499.293 kb on - strandat 4499.293 kb on - strandat 4499.499 kb on + strand, within ECD_04222at 4499.511 kb on + strand, within ECD_04222at 4499.512 kb on - strand, within ECD_04222at 4499.512 kb on - strand, within ECD_04222at 4499.512 kb on - strand, within ECD_04222at 4499.546 kb on - strand, within ECD_04222at 4499.613 kb on + strand, within ECD_04222at 4499.613 kb on + strand, within ECD_04222at 4499.613 kb on + strand, within ECD_04222at 4499.613 kb on + strand, within ECD_04222at 4499.613 kb on + strand, within ECD_04222at 4499.614 kb on - strand, within ECD_04222at 4499.614 kb on - strand, within ECD_04222at 4499.614 kb on - strand, within ECD_04222at 4499.614 kb on - strand, within ECD_04222at 4499.614 kb on - strand, within ECD_04222at 4499.614 kb on - strand, within ECD_04222at 4499.626 kb on - strand, within ECD_04222at 4499.626 kb on - strand, within ECD_04222at 4499.673 kb on + strand, within ECD_04222at 4499.741 kb on + strand, within ECD_04222at 4499.778 kb on + strand, within ECD_04222at 4499.778 kb on + strand, within ECD_04222at 4499.779 kb on - strand, within ECD_04222at 4499.903 kb on - strand, within ECD_04222at 4499.903 kb on - strand, within ECD_04222at 4499.983 kb on + strand, within ECD_04222at 4499.983 kb on + strand, within ECD_04222at 4500.273 kb on + strand, within ECD_04222at 4500.274 kb on - strand, within ECD_04222

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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4,497,884 - ECD_04220 0.76 +0.6
4,497,978 + ECD_04220 0.81 -0.5
4,497,991 - ECD_04220 0.81 -0.1
4,497,991 - ECD_04220 0.81 +0.2
4,498,001 - ECD_04220 0.82 -1.9
4,498,226 + +0.8
4,498,227 - +1.1
4,498,227 - +3.2
4,498,227 - -0.7
4,498,227 - +0.6
4,498,257 - +0.9
4,498,312 + -0.8
4,498,313 - +0.5
4,498,367 - +0.9
4,498,396 - -0.2
4,498,414 - +0.3
4,498,433 - +0.3
4,498,470 + -0.1
4,498,471 - -1.8
4,498,478 + +0.3
4,498,478 + +0.6
4,498,478 + -0.2
4,498,478 + +0.3
4,498,479 - +0.5
4,498,479 - +0.3
4,498,479 - -0.3
4,498,479 - +0.2
4,498,479 - +0.0
4,498,479 - -0.2
4,498,529 + +0.0
4,498,535 - -0.3
4,498,549 - -0.6
4,498,564 + +0.5
4,498,589 + -0.5
4,498,626 + +0.5
4,498,627 - +0.1
4,498,642 - +0.3
4,498,647 - +0.8
4,498,647 - -0.0
4,498,663 - -0.0
4,498,676 - -3.1
4,498,789 + -1.1
4,498,789 + -0.2
4,498,840 + ECD_04221 0.10 -0.4
4,498,841 - ECD_04221 0.10 +1.0
4,498,841 - ECD_04221 0.10 -0.7
4,498,841 - ECD_04221 0.10 -0.5
4,498,841 - ECD_04221 0.10 -1.0
4,498,841 - ECD_04221 0.10 -0.1
4,498,841 - ECD_04221 0.10 -0.4
4,498,844 + ECD_04221 0.11 +1.0
4,498,845 - ECD_04221 0.11 +0.4
4,498,845 - ECD_04221 0.11 +1.3
4,498,845 - ECD_04221 0.11 +0.6
4,498,845 - ECD_04221 0.11 +0.8
4,498,963 - ECD_04221 0.34 -1.4
4,499,165 + ECD_04221 0.73 +1.3
4,499,234 + ECD_04221 0.87 +0.3
4,499,235 - ECD_04221 0.87 -0.9
4,499,293 - -0.2
4,499,293 - -0.2
4,499,499 + ECD_04222 0.12 +0.3
4,499,511 + ECD_04222 0.12 +0.1
4,499,512 - ECD_04222 0.12 +0.9
4,499,512 - ECD_04222 0.12 -0.2
4,499,512 - ECD_04222 0.12 +0.7
4,499,546 - ECD_04222 0.15 +0.5
4,499,613 + ECD_04222 0.19 -0.7
4,499,613 + ECD_04222 0.19 -0.2
4,499,613 + ECD_04222 0.19 +0.1
4,499,613 + ECD_04222 0.19 +0.2
4,499,613 + ECD_04222 0.19 -0.2
4,499,614 - ECD_04222 0.19 +0.0
4,499,614 - ECD_04222 0.19 +0.9
4,499,614 - ECD_04222 0.19 +0.8
4,499,614 - ECD_04222 0.19 -0.2
4,499,614 - ECD_04222 0.19 +0.2
4,499,614 - ECD_04222 0.19 -0.2
4,499,626 - ECD_04222 0.20 +1.3
4,499,626 - ECD_04222 0.20 -0.4
4,499,673 + ECD_04222 0.23 +0.2
4,499,741 + ECD_04222 0.27 +0.4
4,499,778 + ECD_04222 0.29 +0.7
4,499,778 + ECD_04222 0.29 +0.1
4,499,779 - ECD_04222 0.29 -0.7
4,499,903 - ECD_04222 0.37 -0.3
4,499,903 - ECD_04222 0.37 -0.6
4,499,983 + ECD_04222 0.43 -0.3
4,499,983 + ECD_04222 0.43 +0.1
4,500,273 + ECD_04222 0.61 +0.1
4,500,274 - ECD_04222 0.61 -2.0

Or see this region's nucleotide sequence