Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04016 and ECD_04017 are separated by 41 nucleotides ECD_04017 and ECD_04018 are separated by 51 nucleotides ECD_04018 and ECD_04019 are separated by 110 nucleotides ECD_04019 and ECD_04020 are separated by 175 nucleotides ECD_04020 and ECD_04021 overlap by 7 nucleotides
ECD_04016: ECD_04016 - EF-P-Lys34 lysylation protein; weak lysine 2,3-aminomutase, at 4,281,705 to 4,282,733
_04016
ECD_04017: ECD_04017 - polyproline-specific translation elongation factor EF-P, at 4,282,775 to 4,283,341
_04017
ECD_04018: ECD_04018 - entericidin A membrane lipoprotein, antidote entericidin B, at 4,283,393 to 4,283,518
_04018
ECD_04019: ECD_04019 - entericidin B membrane lipoprotein, at 4,283,629 to 4,283,775
_04019
ECD_04020: ECD_04020 - multidrug efflux system protein, at 4,283,951 to 4,284,268
_04020
ECD_04021: ECD_04021 - outer membrane lipoprotein cell division and growth lipocalin, at 4,284,262 to 4,284,798
_04021
Position (kb) 4282
4283
4284 Strain fitness (log2 ratio) -2
-1
0
1 at 4283.339 kb on + strand at 4283.450 kb on - strand, within ECD_04018 at 4283.575 kb on - strand at 4283.575 kb on - strand at 4283.578 kb on - strand at 4283.590 kb on + strand at 4283.600 kb on + strand at 4283.610 kb on + strand at 4283.628 kb on + strand at 4283.629 kb on - strand at 4283.681 kb on + strand, within ECD_04019 at 4283.684 kb on + strand, within ECD_04019 at 4283.685 kb on - strand, within ECD_04019 at 4283.835 kb on + strand at 4283.835 kb on + strand at 4283.836 kb on - strand at 4283.836 kb on - strand at 4283.838 kb on + strand at 4283.839 kb on - strand at 4283.951 kb on - strand at 4283.951 kb on - strand at 4283.963 kb on - strand at 4283.967 kb on + strand at 4283.967 kb on + strand at 4283.967 kb on + strand at 4283.967 kb on + strand at 4283.968 kb on - strand at 4283.972 kb on - strand at 4284.014 kb on + strand, within ECD_04020 at 4284.014 kb on + strand, within ECD_04020 at 4284.049 kb on + strand, within ECD_04020 at 4284.052 kb on + strand, within ECD_04020 at 4284.052 kb on + strand, within ECD_04020 at 4284.053 kb on - strand, within ECD_04020 at 4284.053 kb on - strand, within ECD_04020 at 4284.053 kb on - strand, within ECD_04020 at 4284.126 kb on - strand, within ECD_04020 at 4284.177 kb on + strand, within ECD_04020 at 4284.267 kb on - strand at 4284.270 kb on + strand at 4284.292 kb on - strand at 4284.297 kb on + strand at 4284.298 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 4,283,339 + -0.0 4,283,450 - ECD_04018 0.45 +0.6 4,283,575 - +1.4 4,283,575 - -1.1 4,283,578 - -1.9 4,283,590 + +0.2 4,283,600 + +0.2 4,283,610 + -0.2 4,283,628 + +0.1 4,283,629 - -0.4 4,283,681 + ECD_04019 0.35 +0.4 4,283,684 + ECD_04019 0.37 -1.6 4,283,685 - ECD_04019 0.38 -0.1 4,283,835 + -0.2 4,283,835 + +0.3 4,283,836 - -0.2 4,283,836 - -0.0 4,283,838 + +1.2 4,283,839 - +0.3 4,283,951 - +0.9 4,283,951 - +0.3 4,283,963 - +0.0 4,283,967 + +1.1 4,283,967 + -1.1 4,283,967 + +1.0 4,283,967 + +0.1 4,283,968 - -0.5 4,283,972 - +0.4 4,284,014 + ECD_04020 0.20 +0.6 4,284,014 + ECD_04020 0.20 +0.4 4,284,049 + ECD_04020 0.31 -0.2 4,284,052 + ECD_04020 0.32 -0.2 4,284,052 + ECD_04020 0.32 -2.2 4,284,053 - ECD_04020 0.32 -0.6 4,284,053 - ECD_04020 0.32 -0.9 4,284,053 - ECD_04020 0.32 +0.3 4,284,126 - ECD_04020 0.55 +0.3 4,284,177 + ECD_04020 0.71 -0.3 4,284,267 - +0.1 4,284,270 + +0.1 4,284,292 - +0.4 4,284,297 + +0.2 4,284,298 - -1.2
Or see this region's nucleotide sequence