Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04015 and ECD_04016 are separated by 394 nucleotides ECD_04016 and ECD_04017 are separated by 41 nucleotides ECD_04017 and ECD_04018 are separated by 51 nucleotides ECD_04018 and ECD_04019 are separated by 110 nucleotides
ECD_04015: ECD_04015 - uncharacterized protein, at 4,280,441 to 4,281,310
_04015
ECD_04016: ECD_04016 - EF-P-Lys34 lysylation protein; weak lysine 2,3-aminomutase, at 4,281,705 to 4,282,733
_04016
ECD_04017: ECD_04017 - polyproline-specific translation elongation factor EF-P, at 4,282,775 to 4,283,341
_04017
ECD_04018: ECD_04018 - entericidin A membrane lipoprotein, antidote entericidin B, at 4,283,393 to 4,283,518
_04018
ECD_04019: ECD_04019 - entericidin B membrane lipoprotein, at 4,283,629 to 4,283,775
_04019
Position (kb) 4281
4282
4283 Strain fitness (log2 ratio) -2
-1
0
1 at 4280.812 kb on - strand, within ECD_04015 at 4280.814 kb on - strand, within ECD_04015 at 4281.137 kb on - strand, within ECD_04015 at 4281.388 kb on - strand at 4281.464 kb on + strand at 4281.554 kb on + strand at 4281.554 kb on + strand at 4281.646 kb on - strand at 4281.706 kb on + strand at 4283.339 kb on + strand at 4283.450 kb on - strand, within ECD_04018 at 4283.575 kb on - strand at 4283.575 kb on - strand at 4283.578 kb on - strand at 4283.590 kb on + strand at 4283.600 kb on + strand at 4283.610 kb on + strand at 4283.628 kb on + strand at 4283.629 kb on - strand at 4283.681 kb on + strand, within ECD_04019 at 4283.684 kb on + strand, within ECD_04019 at 4283.685 kb on - strand, within ECD_04019
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 4,280,812 - ECD_04015 0.43 +0.6 4,280,814 - ECD_04015 0.43 -0.1 4,281,137 - ECD_04015 0.80 -0.2 4,281,388 - -0.5 4,281,464 + -0.9 4,281,554 + -0.4 4,281,554 + -0.6 4,281,646 - -0.1 4,281,706 + +1.6 4,283,339 + -0.0 4,283,450 - ECD_04018 0.45 +0.6 4,283,575 - +1.4 4,283,575 - -1.1 4,283,578 - -1.9 4,283,590 + +0.2 4,283,600 + +0.2 4,283,610 + -0.2 4,283,628 + +0.1 4,283,629 - -0.4 4,283,681 + ECD_04019 0.35 +0.4 4,283,684 + ECD_04019 0.37 -1.6 4,283,685 - ECD_04019 0.38 -0.1
Or see this region's nucleotide sequence