Strain Fitness in Escherichia coli BL21 around ECD_04014

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04013 and ECD_04014 are separated by 137 nucleotidesECD_04014 and ECD_04015 are separated by 192 nucleotides ECD_04013: ECD_04013 - Cpn60 chaperonin GroEL, large subunit of GroESL, at 4,278,111 to 4,279,757 _04013 ECD_04014: ECD_04014 - DUF4156 family lipoprotein, at 4,279,895 to 4,280,248 _04014 ECD_04015: ECD_04015 - uncharacterized protein, at 4,280,441 to 4,281,310 _04015 Position (kb) 4279 4280 4281Strain fitness (log2 ratio) -2 -1 0 1at 4279.755 kb on + strandat 4279.756 kb on - strandat 4279.892 kb on - strandat 4279.902 kb on + strandat 4279.903 kb on - strandat 4279.907 kb on + strandat 4279.908 kb on - strandat 4279.936 kb on - strand, within ECD_04014at 4279.951 kb on + strand, within ECD_04014at 4279.952 kb on - strand, within ECD_04014at 4279.989 kb on + strand, within ECD_04014at 4279.989 kb on + strand, within ECD_04014at 4279.990 kb on - strand, within ECD_04014at 4280.035 kb on + strand, within ECD_04014at 4280.047 kb on + strand, within ECD_04014at 4280.048 kb on - strand, within ECD_04014at 4280.095 kb on + strand, within ECD_04014at 4280.231 kb on + strandat 4280.233 kb on + strandat 4280.233 kb on + strandat 4280.233 kb on + strandat 4280.234 kb on - strandat 4280.266 kb on + strandat 4280.266 kb on + strandat 4280.266 kb on + strandat 4280.269 kb on - strandat 4280.300 kb on - strandat 4280.300 kb on - strandat 4280.301 kb on + strandat 4280.302 kb on - strandat 4280.302 kb on - strandat 4280.302 kb on - strandat 4280.428 kb on - strandat 4280.483 kb on + strandat 4280.483 kb on + strandat 4280.483 kb on + strandat 4280.484 kb on - strandat 4280.556 kb on + strand, within ECD_04015at 4280.556 kb on + strand, within ECD_04015at 4280.630 kb on + strand, within ECD_04015at 4280.812 kb on - strand, within ECD_04015at 4280.814 kb on - strand, within ECD_04015at 4281.137 kb on - strand, within ECD_04015

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
4,279,755 + +0.1
4,279,756 - +0.3
4,279,892 - +0.9
4,279,902 + -0.3
4,279,903 - -0.3
4,279,907 + -0.4
4,279,908 - -0.0
4,279,936 - ECD_04014 0.12 +0.6
4,279,951 + ECD_04014 0.16 -1.6
4,279,952 - ECD_04014 0.16 +0.4
4,279,989 + ECD_04014 0.27 +0.2
4,279,989 + ECD_04014 0.27 +0.4
4,279,990 - ECD_04014 0.27 -2.6
4,280,035 + ECD_04014 0.40 +1.2
4,280,047 + ECD_04014 0.43 +0.5
4,280,048 - ECD_04014 0.43 -0.2
4,280,095 + ECD_04014 0.56 +0.7
4,280,231 + -0.1
4,280,233 + -0.0
4,280,233 + -0.6
4,280,233 + -0.1
4,280,234 - +0.0
4,280,266 + +1.1
4,280,266 + -0.2
4,280,266 + +0.0
4,280,269 - -0.2
4,280,300 - -0.3
4,280,300 - -1.0
4,280,301 + +0.2
4,280,302 - +0.9
4,280,302 - -0.3
4,280,302 - -0.6
4,280,428 - +0.1
4,280,483 + -1.3
4,280,483 + +0.8
4,280,483 + -1.1
4,280,484 - +0.5
4,280,556 + ECD_04015 0.13 -0.4
4,280,556 + ECD_04015 0.13 +1.2
4,280,630 + ECD_04015 0.22 +0.1
4,280,812 - ECD_04015 0.43 +0.6
4,280,814 - ECD_04015 0.43 -0.1
4,281,137 - ECD_04015 0.80 -0.2

Or see this region's nucleotide sequence