Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03976 and ECD_03977 are separated by 24 nucleotides ECD_03977 and ECD_03978 are separated by 132 nucleotides ECD_03978 and ECD_03979 are separated by 557 nucleotides
ECD_03976: ECD_03976 - phosphonate ABC transporter periplasmic binding protein, at 4,230,515 to 4,231,531
_03976
ECD_03977: ECD_03977 - phosphonate ABC transporter ATPase, at 4,231,556 to 4,232,344
_03977
ECD_03978: ECD_03978 - metalloprotein superfamily protein, at 4,232,477 to 4,232,920
_03978
ECD_03979: ECD_03979 - zinc-ribbon family protein, at 4,233,478 to 4,233,813
_03979
Position (kb)
4232
4233 Strain fitness (log2 ratio)
-2
-1
0
1 at 4231.517 kb on + strand at 4231.517 kb on + strand at 4231.517 kb on + strand at 4231.648 kb on - strand, within ECD_03977 at 4231.702 kb on - strand, within ECD_03977 at 4232.036 kb on + strand, within ECD_03977 at 4232.037 kb on - strand, within ECD_03977 at 4232.173 kb on + strand, within ECD_03977 at 4232.204 kb on + strand, within ECD_03977 at 4232.407 kb on - strand at 4232.670 kb on + strand, within ECD_03978 at 4232.830 kb on + strand, within ECD_03978 at 4232.854 kb on + strand, within ECD_03978 at 4232.855 kb on - strand, within ECD_03978 at 4232.855 kb on - strand, within ECD_03978 at 4232.855 kb on - strand, within ECD_03978 at 4232.862 kb on + strand, within ECD_03978 at 4232.904 kb on + strand at 4232.905 kb on - strand at 4232.937 kb on - strand at 4232.957 kb on - strand at 4233.044 kb on - strand at 4233.244 kb on - strand at 4233.391 kb on + strand at 4233.473 kb on + strand at 4233.610 kb on - strand, within ECD_03979 at 4233.630 kb on + strand, within ECD_03979 at 4233.640 kb on - strand, within ECD_03979 at 4233.681 kb on + strand, within ECD_03979 at 4233.752 kb on + strand, within ECD_03979 at 4233.752 kb on + strand, within ECD_03979 at 4233.753 kb on - strand, within ECD_03979 at 4233.753 kb on - strand, within ECD_03979 at 4233.753 kb on - strand, within ECD_03979 at 4233.762 kb on + strand, within ECD_03979 at 4233.777 kb on - strand, within ECD_03979 at 4233.777 kb on - strand, within ECD_03979 at 4233.806 kb on - strand at 4233.883 kb on + strand at 4233.884 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 4,231,517 + -0.1 4,231,517 + +0.7 4,231,517 + -0.1 4,231,648 - ECD_03977 0.12 -0.1 4,231,702 - ECD_03977 0.19 -0.7 4,232,036 + ECD_03977 0.61 -0.5 4,232,037 - ECD_03977 0.61 +0.7 4,232,173 + ECD_03977 0.78 +0.1 4,232,204 + ECD_03977 0.82 +0.6 4,232,407 - +1.0 4,232,670 + ECD_03978 0.43 +0.0 4,232,830 + ECD_03978 0.80 +0.3 4,232,854 + ECD_03978 0.85 -0.0 4,232,855 - ECD_03978 0.85 -0.4 4,232,855 - ECD_03978 0.85 +0.8 4,232,855 - ECD_03978 0.85 -0.3 4,232,862 + ECD_03978 0.87 +0.1 4,232,904 + -1.4 4,232,905 - +0.4 4,232,937 - -0.3 4,232,957 - -1.0 4,233,044 - -0.8 4,233,244 - -0.2 4,233,391 + -2.3 4,233,473 + -0.2 4,233,610 - ECD_03979 0.39 +0.2 4,233,630 + ECD_03979 0.45 +0.5 4,233,640 - ECD_03979 0.48 +0.3 4,233,681 + ECD_03979 0.60 -0.8 4,233,752 + ECD_03979 0.82 -0.2 4,233,752 + ECD_03979 0.82 +0.2 4,233,753 - ECD_03979 0.82 +0.4 4,233,753 - ECD_03979 0.82 +0.4 4,233,753 - ECD_03979 0.82 +0.0 4,233,762 + ECD_03979 0.85 +0.8 4,233,777 - ECD_03979 0.89 -1.6 4,233,777 - ECD_03979 0.89 +0.4 4,233,806 - +0.0 4,233,883 + +0.0 4,233,884 - +1.1
Or see this region's nucleotide sequence