Strain Fitness in Escherichia coli BL21 around ECD_03954

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03953 and ECD_03954 overlap by 1 nucleotidesECD_03954 and ECD_03955 are separated by 502 nucleotides ECD_03953: ECD_03953 - membrane translocase (MDR) of MdtNOP efflux pump, PET family, at 4,208,214 to 4,210,265 _03953 ECD_03954: ECD_03954 - membrane fusion protein of efflux pump, at 4,210,265 to 4,211,296 _03954 ECD_03955: ECD_03955 - metallo-beta-lactamase superfamily protein, at 4,211,799 to 4,213,784 _03955 Position (kb) 4210 4211 4212Strain fitness (log2 ratio) -2 -1 0 1at 4209.281 kb on + strand, within ECD_03953at 4209.306 kb on + strand, within ECD_03953at 4209.306 kb on + strand, within ECD_03953at 4209.307 kb on - strand, within ECD_03953at 4209.511 kb on + strand, within ECD_03953at 4209.517 kb on + strand, within ECD_03953at 4209.517 kb on + strand, within ECD_03953at 4209.517 kb on + strand, within ECD_03953at 4209.517 kb on + strand, within ECD_03953at 4209.773 kb on - strand, within ECD_03953at 4209.788 kb on + strand, within ECD_03953at 4209.789 kb on - strand, within ECD_03953at 4209.857 kb on + strand, within ECD_03953at 4209.970 kb on + strand, within ECD_03953at 4209.982 kb on + strand, within ECD_03953at 4210.375 kb on + strand, within ECD_03954at 4210.460 kb on - strand, within ECD_03954at 4210.510 kb on + strand, within ECD_03954at 4210.523 kb on - strand, within ECD_03954at 4210.560 kb on + strand, within ECD_03954at 4210.560 kb on + strand, within ECD_03954at 4210.561 kb on - strand, within ECD_03954at 4210.733 kb on + strand, within ECD_03954at 4210.733 kb on + strand, within ECD_03954at 4210.734 kb on - strand, within ECD_03954at 4210.778 kb on + strand, within ECD_03954at 4210.793 kb on - strand, within ECD_03954at 4210.891 kb on + strand, within ECD_03954at 4210.891 kb on + strand, within ECD_03954at 4210.891 kb on + strand, within ECD_03954at 4210.891 kb on + strand, within ECD_03954at 4210.892 kb on - strand, within ECD_03954at 4210.892 kb on - strand, within ECD_03954at 4211.118 kb on - strand, within ECD_03954at 4211.118 kb on - strand, within ECD_03954at 4211.156 kb on - strand, within ECD_03954at 4211.170 kb on - strand, within ECD_03954at 4211.179 kb on + strand, within ECD_03954at 4211.179 kb on + strand, within ECD_03954at 4211.179 kb on + strand, within ECD_03954at 4211.180 kb on - strand, within ECD_03954at 4211.180 kb on - strand, within ECD_03954at 4211.180 kb on - strand, within ECD_03954at 4211.180 kb on - strand, within ECD_03954at 4211.199 kb on - strandat 4211.288 kb on - strandat 4212.008 kb on + strand, within ECD_03955at 4212.008 kb on + strand, within ECD_03955at 4212.008 kb on + strand, within ECD_03955at 4212.009 kb on - strand, within ECD_03955at 4212.009 kb on - strand, within ECD_03955at 4212.056 kb on + strand, within ECD_03955at 4212.188 kb on + strand, within ECD_03955at 4212.189 kb on - strand, within ECD_03955at 4212.189 kb on - strand, within ECD_03955at 4212.189 kb on - strand, within ECD_03955at 4212.226 kb on + strand, within ECD_03955

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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4,209,281 + ECD_03953 0.52 +1.2
4,209,306 + ECD_03953 0.53 -2.1
4,209,306 + ECD_03953 0.53 +0.2
4,209,307 - ECD_03953 0.53 +0.3
4,209,511 + ECD_03953 0.63 -0.7
4,209,517 + ECD_03953 0.63 +0.7
4,209,517 + ECD_03953 0.63 -0.5
4,209,517 + ECD_03953 0.63 +0.6
4,209,517 + ECD_03953 0.63 -0.0
4,209,773 - ECD_03953 0.76 -0.6
4,209,788 + ECD_03953 0.77 -1.2
4,209,789 - ECD_03953 0.77 -0.4
4,209,857 + ECD_03953 0.80 -0.3
4,209,970 + ECD_03953 0.86 -0.5
4,209,982 + ECD_03953 0.86 -0.7
4,210,375 + ECD_03954 0.11 +0.1
4,210,460 - ECD_03954 0.19 -0.5
4,210,510 + ECD_03954 0.24 -0.5
4,210,523 - ECD_03954 0.25 -1.3
4,210,560 + ECD_03954 0.29 +0.5
4,210,560 + ECD_03954 0.29 +0.4
4,210,561 - ECD_03954 0.29 -0.5
4,210,733 + ECD_03954 0.45 +0.8
4,210,733 + ECD_03954 0.45 +0.4
4,210,734 - ECD_03954 0.45 -0.2
4,210,778 + ECD_03954 0.50 +1.1
4,210,793 - ECD_03954 0.51 -0.4
4,210,891 + ECD_03954 0.61 +0.3
4,210,891 + ECD_03954 0.61 -1.1
4,210,891 + ECD_03954 0.61 +0.5
4,210,891 + ECD_03954 0.61 +1.4
4,210,892 - ECD_03954 0.61 -0.3
4,210,892 - ECD_03954 0.61 -0.6
4,211,118 - ECD_03954 0.83 +0.6
4,211,118 - ECD_03954 0.83 -0.6
4,211,156 - ECD_03954 0.86 -0.3
4,211,170 - ECD_03954 0.88 +1.6
4,211,179 + ECD_03954 0.89 -0.5
4,211,179 + ECD_03954 0.89 +0.3
4,211,179 + ECD_03954 0.89 -0.1
4,211,180 - ECD_03954 0.89 +0.4
4,211,180 - ECD_03954 0.89 -0.4
4,211,180 - ECD_03954 0.89 -0.2
4,211,180 - ECD_03954 0.89 -0.9
4,211,199 - +0.1
4,211,288 - +0.7
4,212,008 + ECD_03955 0.11 -0.1
4,212,008 + ECD_03955 0.11 -0.5
4,212,008 + ECD_03955 0.11 +0.7
4,212,009 - ECD_03955 0.11 +0.2
4,212,009 - ECD_03955 0.11 +0.6
4,212,056 + ECD_03955 0.13 +0.9
4,212,188 + ECD_03955 0.20 +0.5
4,212,189 - ECD_03955 0.20 -0.5
4,212,189 - ECD_03955 0.20 +0.0
4,212,189 - ECD_03955 0.20 +0.1
4,212,226 + ECD_03955 0.22 -0.7

Or see this region's nucleotide sequence