Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03953 and ECD_03954 overlap by 1 nucleotides ECD_03954 and ECD_03955 are separated by 502 nucleotides
ECD_03953: ECD_03953 - membrane translocase (MDR) of MdtNOP efflux pump, PET family, at 4,208,214 to 4,210,265
_03953
ECD_03954: ECD_03954 - membrane fusion protein of efflux pump, at 4,210,265 to 4,211,296
_03954
ECD_03955: ECD_03955 - metallo-beta-lactamase superfamily protein, at 4,211,799 to 4,213,784
_03955
Position (kb)
4210
4211
4212 Strain fitness (log2 ratio)
-2
-1
0
1 at 4209.281 kb on + strand, within ECD_03953 at 4209.306 kb on + strand, within ECD_03953 at 4209.306 kb on + strand, within ECD_03953 at 4209.307 kb on - strand, within ECD_03953 at 4209.511 kb on + strand, within ECD_03953 at 4209.517 kb on + strand, within ECD_03953 at 4209.517 kb on + strand, within ECD_03953 at 4209.517 kb on + strand, within ECD_03953 at 4209.517 kb on + strand, within ECD_03953 at 4209.773 kb on - strand, within ECD_03953 at 4209.788 kb on + strand, within ECD_03953 at 4209.789 kb on - strand, within ECD_03953 at 4209.857 kb on + strand, within ECD_03953 at 4209.970 kb on + strand, within ECD_03953 at 4209.982 kb on + strand, within ECD_03953 at 4210.375 kb on + strand, within ECD_03954 at 4210.460 kb on - strand, within ECD_03954 at 4210.510 kb on + strand, within ECD_03954 at 4210.523 kb on - strand, within ECD_03954 at 4210.560 kb on + strand, within ECD_03954 at 4210.560 kb on + strand, within ECD_03954 at 4210.561 kb on - strand, within ECD_03954 at 4210.733 kb on + strand, within ECD_03954 at 4210.733 kb on + strand, within ECD_03954 at 4210.734 kb on - strand, within ECD_03954 at 4210.778 kb on + strand, within ECD_03954 at 4210.793 kb on - strand, within ECD_03954 at 4210.891 kb on + strand, within ECD_03954 at 4210.891 kb on + strand, within ECD_03954 at 4210.891 kb on + strand, within ECD_03954 at 4210.891 kb on + strand, within ECD_03954 at 4210.892 kb on - strand, within ECD_03954 at 4210.892 kb on - strand, within ECD_03954 at 4211.118 kb on - strand, within ECD_03954 at 4211.118 kb on - strand, within ECD_03954 at 4211.156 kb on - strand, within ECD_03954 at 4211.170 kb on - strand, within ECD_03954 at 4211.179 kb on + strand, within ECD_03954 at 4211.179 kb on + strand, within ECD_03954 at 4211.179 kb on + strand, within ECD_03954 at 4211.180 kb on - strand, within ECD_03954 at 4211.180 kb on - strand, within ECD_03954 at 4211.180 kb on - strand, within ECD_03954 at 4211.180 kb on - strand, within ECD_03954 at 4211.199 kb on - strand at 4211.288 kb on - strand at 4212.008 kb on + strand, within ECD_03955 at 4212.008 kb on + strand, within ECD_03955 at 4212.008 kb on + strand, within ECD_03955 at 4212.009 kb on - strand, within ECD_03955 at 4212.009 kb on - strand, within ECD_03955 at 4212.056 kb on + strand, within ECD_03955 at 4212.188 kb on + strand, within ECD_03955 at 4212.189 kb on - strand, within ECD_03955 at 4212.189 kb on - strand, within ECD_03955 at 4212.189 kb on - strand, within ECD_03955 at 4212.226 kb on + strand, within ECD_03955
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 4,209,281 + ECD_03953 0.52 +1.2 4,209,306 + ECD_03953 0.53 -2.1 4,209,306 + ECD_03953 0.53 +0.2 4,209,307 - ECD_03953 0.53 +0.3 4,209,511 + ECD_03953 0.63 -0.7 4,209,517 + ECD_03953 0.63 +0.7 4,209,517 + ECD_03953 0.63 -0.5 4,209,517 + ECD_03953 0.63 +0.6 4,209,517 + ECD_03953 0.63 -0.0 4,209,773 - ECD_03953 0.76 -0.6 4,209,788 + ECD_03953 0.77 -1.2 4,209,789 - ECD_03953 0.77 -0.4 4,209,857 + ECD_03953 0.80 -0.3 4,209,970 + ECD_03953 0.86 -0.5 4,209,982 + ECD_03953 0.86 -0.7 4,210,375 + ECD_03954 0.11 +0.1 4,210,460 - ECD_03954 0.19 -0.5 4,210,510 + ECD_03954 0.24 -0.5 4,210,523 - ECD_03954 0.25 -1.3 4,210,560 + ECD_03954 0.29 +0.5 4,210,560 + ECD_03954 0.29 +0.4 4,210,561 - ECD_03954 0.29 -0.5 4,210,733 + ECD_03954 0.45 +0.8 4,210,733 + ECD_03954 0.45 +0.4 4,210,734 - ECD_03954 0.45 -0.2 4,210,778 + ECD_03954 0.50 +1.1 4,210,793 - ECD_03954 0.51 -0.4 4,210,891 + ECD_03954 0.61 +0.3 4,210,891 + ECD_03954 0.61 -1.1 4,210,891 + ECD_03954 0.61 +0.5 4,210,891 + ECD_03954 0.61 +1.4 4,210,892 - ECD_03954 0.61 -0.3 4,210,892 - ECD_03954 0.61 -0.6 4,211,118 - ECD_03954 0.83 +0.6 4,211,118 - ECD_03954 0.83 -0.6 4,211,156 - ECD_03954 0.86 -0.3 4,211,170 - ECD_03954 0.88 +1.6 4,211,179 + ECD_03954 0.89 -0.5 4,211,179 + ECD_03954 0.89 +0.3 4,211,179 + ECD_03954 0.89 -0.1 4,211,180 - ECD_03954 0.89 +0.4 4,211,180 - ECD_03954 0.89 -0.4 4,211,180 - ECD_03954 0.89 -0.2 4,211,180 - ECD_03954 0.89 -0.9 4,211,199 - +0.1 4,211,288 - +0.7 4,212,008 + ECD_03955 0.11 -0.1 4,212,008 + ECD_03955 0.11 -0.5 4,212,008 + ECD_03955 0.11 +0.7 4,212,009 - ECD_03955 0.11 +0.2 4,212,009 - ECD_03955 0.11 +0.6 4,212,056 + ECD_03955 0.13 +0.9 4,212,188 + ECD_03955 0.20 +0.5 4,212,189 - ECD_03955 0.20 -0.5 4,212,189 - ECD_03955 0.20 +0.0 4,212,189 - ECD_03955 0.20 +0.1 4,212,226 + ECD_03955 0.22 -0.7
Or see this region's nucleotide sequence