Strain Fitness in Escherichia coli BL21 around ECD_03951

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03950 and ECD_03951 are separated by 93 nucleotidesECD_03951 and ECD_03952 are separated by 197 nucleotides ECD_03950: ECD_03950 - Sel1 family TPR-like repeat protein, at 4,203,623 to 4,204,312 _03950 ECD_03951: ECD_03951 - formate dehydrogenase-H, selenopolypeptide subunit, at 4,204,406 to 4,206,553 _03951 ECD_03952: ECD_03952 - outer membrane factor of efflux pump, at 4,206,751 to 4,208,217 _03952 Position (kb) 4204 4205 4206 4207Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4203.533 kb on + strandat 4203.620 kb on - strandat 4203.676 kb on + strandat 4203.677 kb on - strandat 4203.970 kb on + strand, within ECD_03950at 4203.970 kb on + strand, within ECD_03950at 4203.971 kb on - strand, within ECD_03950at 4203.974 kb on + strand, within ECD_03950at 4203.995 kb on + strand, within ECD_03950at 4204.147 kb on - strand, within ECD_03950at 4204.175 kb on - strand, within ECD_03950at 4204.236 kb on + strand, within ECD_03950at 4204.237 kb on - strand, within ECD_03950at 4204.237 kb on - strand, within ECD_03950at 4204.347 kb on + strandat 4204.347 kb on + strandat 4204.348 kb on - strandat 4204.404 kb on + strandat 4204.404 kb on + strandat 4204.404 kb on + strandat 4204.449 kb on + strandat 4204.449 kb on + strandat 4204.465 kb on - strandat 4204.516 kb on - strandat 4204.593 kb on + strandat 4204.593 kb on + strandat 4204.594 kb on - strandat 4204.594 kb on - strandat 4204.602 kb on + strandat 4204.602 kb on + strandat 4204.661 kb on - strand, within ECD_03951at 4204.827 kb on - strand, within ECD_03951at 4204.827 kb on - strand, within ECD_03951at 4204.929 kb on + strand, within ECD_03951at 4204.929 kb on + strand, within ECD_03951at 4204.930 kb on - strand, within ECD_03951at 4205.070 kb on + strand, within ECD_03951at 4205.070 kb on + strand, within ECD_03951at 4205.070 kb on + strand, within ECD_03951at 4205.071 kb on - strand, within ECD_03951at 4205.071 kb on - strand, within ECD_03951at 4205.230 kb on + strand, within ECD_03951at 4205.305 kb on + strand, within ECD_03951at 4205.306 kb on - strand, within ECD_03951at 4205.306 kb on - strand, within ECD_03951at 4205.306 kb on - strand, within ECD_03951at 4205.306 kb on - strand, within ECD_03951at 4205.306 kb on - strand, within ECD_03951at 4205.309 kb on + strand, within ECD_03951at 4205.310 kb on - strand, within ECD_03951at 4205.353 kb on + strand, within ECD_03951at 4205.358 kb on + strand, within ECD_03951at 4205.359 kb on - strand, within ECD_03951at 4205.487 kb on + strand, within ECD_03951at 4205.487 kb on + strand, within ECD_03951at 4205.488 kb on - strand, within ECD_03951at 4205.503 kb on - strand, within ECD_03951at 4205.540 kb on + strand, within ECD_03951at 4205.540 kb on + strand, within ECD_03951at 4205.541 kb on - strand, within ECD_03951at 4205.647 kb on - strand, within ECD_03951at 4205.658 kb on - strand, within ECD_03951at 4205.700 kb on + strand, within ECD_03951at 4205.701 kb on - strand, within ECD_03951at 4205.960 kb on - strand, within ECD_03951at 4206.002 kb on + strand, within ECD_03951at 4206.071 kb on - strand, within ECD_03951at 4206.073 kb on + strand, within ECD_03951at 4206.074 kb on - strand, within ECD_03951at 4206.160 kb on + strand, within ECD_03951at 4206.197 kb on + strand, within ECD_03951at 4206.197 kb on + strand, within ECD_03951at 4206.198 kb on - strand, within ECD_03951at 4206.198 kb on - strand, within ECD_03951at 4206.198 kb on - strand, within ECD_03951at 4206.201 kb on + strand, within ECD_03951at 4206.201 kb on + strand, within ECD_03951at 4206.201 kb on + strand, within ECD_03951at 4206.201 kb on + strand, within ECD_03951at 4206.202 kb on - strand, within ECD_03951at 4206.202 kb on - strand, within ECD_03951at 4206.202 kb on - strand, within ECD_03951at 4206.261 kb on + strand, within ECD_03951at 4206.262 kb on - strand, within ECD_03951at 4206.297 kb on + strand, within ECD_03951at 4206.297 kb on + strand, within ECD_03951at 4206.298 kb on - strand, within ECD_03951at 4206.415 kb on - strandat 4206.415 kb on - strandat 4206.415 kb on - strandat 4206.415 kb on - strandat 4206.437 kb on - strandat 4206.526 kb on - strandat 4206.603 kb on + strandat 4206.603 kb on + strandat 4206.603 kb on + strandat 4206.604 kb on - strandat 4206.604 kb on - strandat 4206.604 kb on - strandat 4206.604 kb on - strandat 4206.627 kb on - strandat 4206.662 kb on + strandat 4206.663 kb on - strandat 4206.848 kb on - strandat 4207.059 kb on - strand, within ECD_03952at 4207.059 kb on - strand, within ECD_03952at 4207.059 kb on - strand, within ECD_03952at 4207.059 kb on - strand, within ECD_03952at 4207.059 kb on - strand, within ECD_03952at 4207.334 kb on + strand, within ECD_03952

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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4,203,533 + -0.3
4,203,620 - -3.7
4,203,676 + -0.8
4,203,677 - -0.9
4,203,970 + ECD_03950 0.50 -0.4
4,203,970 + ECD_03950 0.50 +0.6
4,203,971 - ECD_03950 0.50 +0.5
4,203,974 + ECD_03950 0.51 +0.4
4,203,995 + ECD_03950 0.54 +0.7
4,204,147 - ECD_03950 0.76 -2.6
4,204,175 - ECD_03950 0.80 -0.2
4,204,236 + ECD_03950 0.89 +0.1
4,204,237 - ECD_03950 0.89 +1.1
4,204,237 - ECD_03950 0.89 -0.4
4,204,347 + +0.5
4,204,347 + +0.1
4,204,348 - +0.8
4,204,404 + -0.0
4,204,404 + +0.2
4,204,404 + -0.6
4,204,449 + -0.8
4,204,449 + -0.7
4,204,465 - -0.1
4,204,516 - +0.4
4,204,593 + +0.5
4,204,593 + +0.7
4,204,594 - -0.9
4,204,594 - +0.1
4,204,602 + -0.1
4,204,602 + +0.6
4,204,661 - ECD_03951 0.12 +0.8
4,204,827 - ECD_03951 0.20 +1.9
4,204,827 - ECD_03951 0.20 -1.3
4,204,929 + ECD_03951 0.24 -1.2
4,204,929 + ECD_03951 0.24 +0.1
4,204,930 - ECD_03951 0.24 -0.6
4,205,070 + ECD_03951 0.31 -0.4
4,205,070 + ECD_03951 0.31 +0.0
4,205,070 + ECD_03951 0.31 +0.5
4,205,071 - ECD_03951 0.31 -0.4
4,205,071 - ECD_03951 0.31 +0.3
4,205,230 + ECD_03951 0.38 +0.3
4,205,305 + ECD_03951 0.42 -0.3
4,205,306 - ECD_03951 0.42 -0.4
4,205,306 - ECD_03951 0.42 -0.1
4,205,306 - ECD_03951 0.42 -0.5
4,205,306 - ECD_03951 0.42 -0.9
4,205,306 - ECD_03951 0.42 -0.4
4,205,309 + ECD_03951 0.42 -1.2
4,205,310 - ECD_03951 0.42 +1.7
4,205,353 + ECD_03951 0.44 -0.7
4,205,358 + ECD_03951 0.44 +0.7
4,205,359 - ECD_03951 0.44 +1.0
4,205,487 + ECD_03951 0.50 -0.5
4,205,487 + ECD_03951 0.50 +1.0
4,205,488 - ECD_03951 0.50 -0.7
4,205,503 - ECD_03951 0.51 -0.4
4,205,540 + ECD_03951 0.53 +2.0
4,205,540 + ECD_03951 0.53 -0.2
4,205,541 - ECD_03951 0.53 +0.8
4,205,647 - ECD_03951 0.58 +1.9
4,205,658 - ECD_03951 0.58 +0.5
4,205,700 + ECD_03951 0.60 +0.3
4,205,701 - ECD_03951 0.60 -0.1
4,205,960 - ECD_03951 0.72 +0.1
4,206,002 + ECD_03951 0.74 +0.1
4,206,071 - ECD_03951 0.78 +0.9
4,206,073 + ECD_03951 0.78 -0.1
4,206,074 - ECD_03951 0.78 -1.7
4,206,160 + ECD_03951 0.82 +0.4
4,206,197 + ECD_03951 0.83 -0.2
4,206,197 + ECD_03951 0.83 -0.2
4,206,198 - ECD_03951 0.83 +0.8
4,206,198 - ECD_03951 0.83 -0.6
4,206,198 - ECD_03951 0.83 -0.6
4,206,201 + ECD_03951 0.84 +0.3
4,206,201 + ECD_03951 0.84 -1.4
4,206,201 + ECD_03951 0.84 +0.4
4,206,201 + ECD_03951 0.84 +0.7
4,206,202 - ECD_03951 0.84 +0.8
4,206,202 - ECD_03951 0.84 -0.6
4,206,202 - ECD_03951 0.84 -0.7
4,206,261 + ECD_03951 0.86 -0.9
4,206,262 - ECD_03951 0.86 -0.0
4,206,297 + ECD_03951 0.88 +0.7
4,206,297 + ECD_03951 0.88 -0.4
4,206,298 - ECD_03951 0.88 -0.9
4,206,415 - +0.3
4,206,415 - +0.7
4,206,415 - -0.0
4,206,415 - -1.0
4,206,437 - -0.0
4,206,526 - -0.2
4,206,603 + +0.2
4,206,603 + -0.1
4,206,603 + -0.4
4,206,604 - +0.6
4,206,604 - -0.1
4,206,604 - -0.0
4,206,604 - -0.3
4,206,627 - -0.4
4,206,662 + +1.1
4,206,663 - -0.2
4,206,848 - +0.2
4,207,059 - ECD_03952 0.21 -0.8
4,207,059 - ECD_03952 0.21 -0.7
4,207,059 - ECD_03952 0.21 +0.5
4,207,059 - ECD_03952 0.21 -0.2
4,207,059 - ECD_03952 0.21 -0.2
4,207,334 + ECD_03952 0.40 +1.8

Or see this region's nucleotide sequence