Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03834 and ECD_03835 are separated by 14 nucleotides ECD_03835 and ECD_03836 are separated by 50 nucleotides ECD_03836 and ECD_03837 overlap by 35 nucleotides ECD_03837 and ECD_03838 are separated by 1 nucleotides
ECD_03834: ECD_03834 - putative enzyme IIC component of PTS, at 4,051,077 to 4,052,156
_03834
ECD_03835: ECD_03835 - putative enzyme IIB component of PTS, at 4,052,171 to 4,052,491
_03835
ECD_03836: ECD_03836 - putative glycine radical domain-containing pyruvate formate-lyase, at 4,052,542 to 4,054,839
_03836
ECD_03837: ECD_03837 - putative [formate-C-acetyltransferase 2]-activating enzyme; pyruvate formate-lyase 1-activating enzyme, at 4,054,805 to 4,055,683
_03837
ECD_03838: ECD_03838 - putative enzyme IIB component of PTS, at 4,055,685 to 4,056,026
_03838
Position (kb)
4052
4053
4054
4055 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4051.549 kb on + strand, within ECD_03834 at 4051.610 kb on + strand, within ECD_03834 at 4051.645 kb on + strand, within ECD_03834 at 4051.677 kb on + strand, within ECD_03834 at 4051.713 kb on + strand, within ECD_03834 at 4051.713 kb on + strand, within ECD_03834 at 4051.713 kb on + strand, within ECD_03834 at 4051.714 kb on - strand, within ECD_03834 at 4051.714 kb on - strand, within ECD_03834 at 4051.714 kb on - strand, within ECD_03834 at 4051.714 kb on - strand, within ECD_03834 at 4051.716 kb on - strand, within ECD_03834 at 4051.743 kb on - strand, within ECD_03834 at 4051.939 kb on + strand, within ECD_03834 at 4051.940 kb on - strand, within ECD_03834 at 4051.940 kb on - strand, within ECD_03834 at 4051.940 kb on - strand, within ECD_03834 at 4051.969 kb on - strand, within ECD_03834 at 4051.969 kb on - strand, within ECD_03834 at 4052.022 kb on + strand, within ECD_03834 at 4052.023 kb on - strand, within ECD_03834 at 4052.023 kb on - strand, within ECD_03834 at 4052.154 kb on + strand at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.222 kb on + strand, within ECD_03835 at 4052.223 kb on - strand, within ECD_03835 at 4052.223 kb on - strand, within ECD_03835 at 4052.223 kb on - strand, within ECD_03835 at 4052.223 kb on - strand, within ECD_03835 at 4052.223 kb on - strand, within ECD_03835 at 4052.223 kb on - strand, within ECD_03835 at 4052.223 kb on - strand, within ECD_03835 at 4052.223 kb on - strand, within ECD_03835 at 4052.224 kb on + strand, within ECD_03835 at 4052.281 kb on - strand, within ECD_03835 at 4052.345 kb on - strand, within ECD_03835 at 4052.453 kb on - strand, within ECD_03835 at 4052.489 kb on + strand at 4052.490 kb on - strand at 4052.553 kb on + strand at 4052.553 kb on + strand at 4052.554 kb on - strand at 4052.554 kb on - strand at 4052.586 kb on + strand at 4052.620 kb on + strand at 4052.686 kb on + strand at 4052.686 kb on + strand at 4052.687 kb on - strand at 4052.687 kb on - strand at 4052.687 kb on - strand at 4052.687 kb on - strand at 4052.687 kb on - strand at 4052.750 kb on + strand at 4052.769 kb on + strand at 4052.770 kb on - strand at 4052.792 kb on - strand, within ECD_03836 at 4052.847 kb on + strand, within ECD_03836 at 4052.862 kb on + strand, within ECD_03836 at 4052.868 kb on + strand, within ECD_03836 at 4052.869 kb on - strand, within ECD_03836 at 4052.869 kb on - strand, within ECD_03836 at 4052.869 kb on - strand, within ECD_03836 at 4052.869 kb on - strand, within ECD_03836 at 4052.948 kb on + strand, within ECD_03836 at 4052.949 kb on - strand, within ECD_03836 at 4052.949 kb on - strand, within ECD_03836 at 4052.994 kb on + strand, within ECD_03836 at 4052.994 kb on + strand, within ECD_03836 at 4052.994 kb on + strand, within ECD_03836 at 4052.995 kb on - strand, within ECD_03836 at 4052.995 kb on - strand, within ECD_03836 at 4053.012 kb on + strand, within ECD_03836 at 4053.013 kb on - strand, within ECD_03836 at 4053.013 kb on - strand, within ECD_03836 at 4053.015 kb on + strand, within ECD_03836 at 4053.015 kb on + strand, within ECD_03836 at 4053.106 kb on + strand, within ECD_03836 at 4053.107 kb on - strand, within ECD_03836 at 4053.258 kb on + strand, within ECD_03836 at 4053.258 kb on + strand, within ECD_03836 at 4053.259 kb on - strand, within ECD_03836 at 4053.259 kb on - strand, within ECD_03836 at 4053.299 kb on - strand, within ECD_03836 at 4053.319 kb on + strand, within ECD_03836 at 4053.364 kb on + strand, within ECD_03836 at 4053.364 kb on + strand, within ECD_03836 at 4053.365 kb on - strand, within ECD_03836 at 4053.365 kb on - strand, within ECD_03836 at 4053.365 kb on - strand, within ECD_03836 at 4053.366 kb on + strand, within ECD_03836 at 4053.366 kb on + strand, within ECD_03836 at 4053.366 kb on + strand, within ECD_03836 at 4053.367 kb on - strand, within ECD_03836 at 4053.367 kb on - strand, within ECD_03836 at 4053.367 kb on - strand, within ECD_03836 at 4053.367 kb on - strand, within ECD_03836 at 4053.367 kb on - strand, within ECD_03836 at 4053.441 kb on - strand, within ECD_03836 at 4053.517 kb on + strand, within ECD_03836 at 4053.519 kb on + strand, within ECD_03836 at 4053.519 kb on + strand, within ECD_03836 at 4053.520 kb on - strand, within ECD_03836 at 4053.556 kb on - strand, within ECD_03836 at 4053.556 kb on - strand, within ECD_03836 at 4053.596 kb on - strand, within ECD_03836 at 4053.611 kb on + strand, within ECD_03836 at 4053.612 kb on - strand, within ECD_03836 at 4053.806 kb on + strand, within ECD_03836 at 4053.806 kb on + strand, within ECD_03836 at 4053.807 kb on - strand, within ECD_03836 at 4053.913 kb on + strand, within ECD_03836 at 4053.913 kb on + strand, within ECD_03836 at 4053.913 kb on + strand, within ECD_03836 at 4053.914 kb on - strand, within ECD_03836 at 4053.914 kb on - strand, within ECD_03836 at 4053.914 kb on - strand, within ECD_03836 at 4053.955 kb on + strand, within ECD_03836 at 4053.955 kb on + strand, within ECD_03836 at 4053.955 kb on + strand, within ECD_03836 at 4053.955 kb on + strand, within ECD_03836 at 4053.956 kb on - strand, within ECD_03836 at 4053.956 kb on - strand, within ECD_03836 at 4053.984 kb on + strand, within ECD_03836 at 4054.039 kb on - strand, within ECD_03836 at 4054.071 kb on + strand, within ECD_03836 at 4054.092 kb on + strand, within ECD_03836 at 4054.092 kb on + strand, within ECD_03836 at 4054.092 kb on + strand, within ECD_03836 at 4054.093 kb on - strand, within ECD_03836 at 4054.209 kb on - strand, within ECD_03836 at 4054.256 kb on + strand, within ECD_03836 at 4054.276 kb on + strand, within ECD_03836 at 4054.276 kb on + strand, within ECD_03836 at 4054.390 kb on + strand, within ECD_03836 at 4054.390 kb on + strand, within ECD_03836 at 4054.488 kb on + strand, within ECD_03836 at 4054.488 kb on + strand, within ECD_03836 at 4054.488 kb on + strand, within ECD_03836 at 4054.488 kb on + strand, within ECD_03836 at 4054.488 kb on + strand, within ECD_03836 at 4054.662 kb on + strand at 4054.663 kb on - strand at 4054.663 kb on - strand at 4054.663 kb on - strand at 4054.663 kb on - strand at 4054.663 kb on - strand at 4054.667 kb on + strand at 4054.674 kb on + strand at 4054.674 kb on + strand at 4054.674 kb on + strand at 4054.674 kb on + strand at 4054.674 kb on + strand at 4054.674 kb on + strand at 4054.675 kb on - strand at 4054.675 kb on - strand at 4054.684 kb on - strand at 4054.837 kb on + strand at 4054.921 kb on + strand, within ECD_03837 at 4055.220 kb on + strand, within ECD_03837 at 4055.480 kb on - strand, within ECD_03837 at 4055.499 kb on + strand, within ECD_03837 at 4055.500 kb on - strand, within ECD_03837 at 4055.681 kb on + strand at 4055.682 kb on - strand at 4055.682 kb on - strand at 4055.691 kb on + strand at 4055.691 kb on + strand at 4055.732 kb on + strand, within ECD_03838 at 4055.732 kb on + strand, within ECD_03838 at 4055.732 kb on + strand, within ECD_03838 at 4055.733 kb on - strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.736 kb on + strand, within ECD_03838 at 4055.737 kb on - strand, within ECD_03838 at 4055.737 kb on - strand, within ECD_03838 at 4055.737 kb on - strand, within ECD_03838 at 4055.737 kb on - strand, within ECD_03838 at 4055.737 kb on - strand, within ECD_03838 at 4055.737 kb on - strand, within ECD_03838 at 4055.737 kb on - strand, within ECD_03838 at 4055.737 kb on - strand, within ECD_03838 at 4055.737 kb on - strand, within ECD_03838 at 4055.737 kb on - strand, within ECD_03838 at 4055.738 kb on + strand, within ECD_03838 at 4055.739 kb on - strand, within ECD_03838 at 4055.739 kb on - strand, within ECD_03838
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 4,051,549 + ECD_03834 0.44 -0.5 4,051,610 + ECD_03834 0.49 +0.3 4,051,645 + ECD_03834 0.53 -0.2 4,051,677 + ECD_03834 0.56 +0.7 4,051,713 + ECD_03834 0.59 +0.7 4,051,713 + ECD_03834 0.59 +0.1 4,051,713 + ECD_03834 0.59 +0.6 4,051,714 - ECD_03834 0.59 +0.3 4,051,714 - ECD_03834 0.59 -0.6 4,051,714 - ECD_03834 0.59 -0.2 4,051,714 - ECD_03834 0.59 -0.2 4,051,716 - ECD_03834 0.59 -0.4 4,051,743 - ECD_03834 0.62 -0.8 4,051,939 + ECD_03834 0.80 +0.5 4,051,940 - ECD_03834 0.80 +0.5 4,051,940 - ECD_03834 0.80 +0.0 4,051,940 - ECD_03834 0.80 -0.1 4,051,969 - ECD_03834 0.83 -0.4 4,051,969 - ECD_03834 0.83 +0.7 4,052,022 + ECD_03834 0.88 -0.4 4,052,023 - ECD_03834 0.88 +0.2 4,052,023 - ECD_03834 0.88 +0.7 4,052,154 + -0.6 4,052,222 + ECD_03835 0.16 +0.1 4,052,222 + ECD_03835 0.16 +0.5 4,052,222 + ECD_03835 0.16 +0.5 4,052,222 + ECD_03835 0.16 -0.4 4,052,222 + ECD_03835 0.16 +0.1 4,052,222 + ECD_03835 0.16 +1.0 4,052,222 + ECD_03835 0.16 -0.6 4,052,222 + ECD_03835 0.16 +0.9 4,052,222 + ECD_03835 0.16 +0.5 4,052,222 + ECD_03835 0.16 -0.6 4,052,222 + ECD_03835 0.16 +0.1 4,052,222 + ECD_03835 0.16 -0.5 4,052,222 + ECD_03835 0.16 +0.1 4,052,222 + ECD_03835 0.16 -0.2 4,052,222 + ECD_03835 0.16 -0.5 4,052,222 + ECD_03835 0.16 +0.4 4,052,222 + ECD_03835 0.16 -0.3 4,052,222 + ECD_03835 0.16 +0.0 4,052,222 + ECD_03835 0.16 +0.1 4,052,222 + ECD_03835 0.16 -1.0 4,052,223 - ECD_03835 0.16 -0.1 4,052,223 - ECD_03835 0.16 -0.5 4,052,223 - ECD_03835 0.16 +0.4 4,052,223 - ECD_03835 0.16 +1.0 4,052,223 - ECD_03835 0.16 -1.2 4,052,223 - ECD_03835 0.16 +0.0 4,052,223 - ECD_03835 0.16 +0.3 4,052,223 - ECD_03835 0.16 -0.5 4,052,224 + ECD_03835 0.17 +0.1 4,052,281 - ECD_03835 0.34 +0.2 4,052,345 - ECD_03835 0.54 -0.1 4,052,453 - ECD_03835 0.88 +0.5 4,052,489 + +0.1 4,052,490 - +0.4 4,052,553 + -0.6 4,052,553 + +0.3 4,052,554 - -0.7 4,052,554 - +0.0 4,052,586 + -1.9 4,052,620 + -2.3 4,052,686 + +0.1 4,052,686 + +0.5 4,052,687 - -0.2 4,052,687 - -0.2 4,052,687 - -1.6 4,052,687 - +1.9 4,052,687 - -0.7 4,052,750 + +0.5 4,052,769 + -0.2 4,052,770 - +0.7 4,052,792 - ECD_03836 0.11 -0.6 4,052,847 + ECD_03836 0.13 -0.2 4,052,862 + ECD_03836 0.14 -1.0 4,052,868 + ECD_03836 0.14 +0.1 4,052,869 - ECD_03836 0.14 +1.6 4,052,869 - ECD_03836 0.14 +0.8 4,052,869 - ECD_03836 0.14 -0.3 4,052,869 - ECD_03836 0.14 +0.7 4,052,948 + ECD_03836 0.18 -0.1 4,052,949 - ECD_03836 0.18 +0.3 4,052,949 - ECD_03836 0.18 +0.3 4,052,994 + ECD_03836 0.20 -0.9 4,052,994 + ECD_03836 0.20 -0.2 4,052,994 + ECD_03836 0.20 +0.1 4,052,995 - ECD_03836 0.20 -0.1 4,052,995 - ECD_03836 0.20 -0.7 4,053,012 + ECD_03836 0.20 +0.1 4,053,013 - ECD_03836 0.20 +0.5 4,053,013 - ECD_03836 0.20 -0.4 4,053,015 + ECD_03836 0.21 -0.1 4,053,015 + ECD_03836 0.21 -0.1 4,053,106 + ECD_03836 0.25 -0.2 4,053,107 - ECD_03836 0.25 -0.1 4,053,258 + ECD_03836 0.31 -0.1 4,053,258 + ECD_03836 0.31 +0.6 4,053,259 - ECD_03836 0.31 -1.9 4,053,259 - ECD_03836 0.31 -0.3 4,053,299 - ECD_03836 0.33 -0.3 4,053,319 + ECD_03836 0.34 -0.5 4,053,364 + ECD_03836 0.36 -0.0 4,053,364 + ECD_03836 0.36 +0.1 4,053,365 - ECD_03836 0.36 +2.4 4,053,365 - ECD_03836 0.36 +1.7 4,053,365 - ECD_03836 0.36 -0.3 4,053,366 + ECD_03836 0.36 -0.9 4,053,366 + ECD_03836 0.36 -0.3 4,053,366 + ECD_03836 0.36 +1.4 4,053,367 - ECD_03836 0.36 +0.1 4,053,367 - ECD_03836 0.36 +0.2 4,053,367 - ECD_03836 0.36 -0.6 4,053,367 - ECD_03836 0.36 +0.4 4,053,367 - ECD_03836 0.36 +0.8 4,053,441 - ECD_03836 0.39 -0.8 4,053,517 + ECD_03836 0.42 -0.0 4,053,519 + ECD_03836 0.43 -0.6 4,053,519 + ECD_03836 0.43 +0.9 4,053,520 - ECD_03836 0.43 +0.7 4,053,556 - ECD_03836 0.44 +0.1 4,053,556 - ECD_03836 0.44 -0.2 4,053,596 - ECD_03836 0.46 +1.8 4,053,611 + ECD_03836 0.47 +0.4 4,053,612 - ECD_03836 0.47 +0.2 4,053,806 + ECD_03836 0.55 -0.3 4,053,806 + ECD_03836 0.55 +0.1 4,053,807 - ECD_03836 0.55 -0.6 4,053,913 + ECD_03836 0.60 +0.5 4,053,913 + ECD_03836 0.60 -0.3 4,053,913 + ECD_03836 0.60 +0.7 4,053,914 - ECD_03836 0.60 -0.1 4,053,914 - ECD_03836 0.60 +0.2 4,053,914 - ECD_03836 0.60 -1.2 4,053,955 + ECD_03836 0.61 +0.3 4,053,955 + ECD_03836 0.61 +0.8 4,053,955 + ECD_03836 0.61 -0.3 4,053,955 + ECD_03836 0.61 -0.4 4,053,956 - ECD_03836 0.62 +0.7 4,053,956 - ECD_03836 0.62 +0.1 4,053,984 + ECD_03836 0.63 +0.1 4,054,039 - ECD_03836 0.65 +0.3 4,054,071 + ECD_03836 0.67 +0.4 4,054,092 + ECD_03836 0.67 +0.5 4,054,092 + ECD_03836 0.67 +0.1 4,054,092 + ECD_03836 0.67 +0.6 4,054,093 - ECD_03836 0.67 +0.0 4,054,209 - ECD_03836 0.73 -0.6 4,054,256 + ECD_03836 0.75 -0.1 4,054,276 + ECD_03836 0.75 +0.2 4,054,276 + ECD_03836 0.75 +0.3 4,054,390 + ECD_03836 0.80 -0.6 4,054,390 + ECD_03836 0.80 -0.9 4,054,488 + ECD_03836 0.85 -1.4 4,054,488 + ECD_03836 0.85 -1.2 4,054,488 + ECD_03836 0.85 -0.2 4,054,488 + ECD_03836 0.85 +0.3 4,054,488 + ECD_03836 0.85 -0.2 4,054,662 + +0.5 4,054,663 - +2.4 4,054,663 - -0.7 4,054,663 - -0.2 4,054,663 - +0.9 4,054,663 - +0.3 4,054,667 + -0.8 4,054,674 + +0.1 4,054,674 + -0.3 4,054,674 + -0.0 4,054,674 + +0.2 4,054,674 + -0.2 4,054,674 + -0.2 4,054,675 - +1.3 4,054,675 - -0.7 4,054,684 - -0.2 4,054,837 + -1.3 4,054,921 + ECD_03837 0.13 -0.9 4,055,220 + ECD_03837 0.47 +0.2 4,055,480 - ECD_03837 0.77 +0.4 4,055,499 + ECD_03837 0.79 -1.2 4,055,500 - ECD_03837 0.79 -2.0 4,055,681 + +0.0 4,055,682 - +0.8 4,055,682 - +0.1 4,055,691 + +0.2 4,055,691 + -0.7 4,055,732 + ECD_03838 0.14 -0.8 4,055,732 + ECD_03838 0.14 +0.2 4,055,732 + ECD_03838 0.14 +0.1 4,055,733 - ECD_03838 0.14 -1.5 4,055,736 + ECD_03838 0.15 +0.6 4,055,736 + ECD_03838 0.15 -0.9 4,055,736 + ECD_03838 0.15 +1.0 4,055,736 + ECD_03838 0.15 -0.3 4,055,736 + ECD_03838 0.15 +1.1 4,055,736 + ECD_03838 0.15 -0.3 4,055,736 + ECD_03838 0.15 +1.3 4,055,736 + ECD_03838 0.15 -0.6 4,055,736 + ECD_03838 0.15 +0.3 4,055,736 + ECD_03838 0.15 -0.6 4,055,736 + ECD_03838 0.15 -0.4 4,055,736 + ECD_03838 0.15 +0.6 4,055,736 + ECD_03838 0.15 +0.6 4,055,736 + ECD_03838 0.15 -0.6 4,055,736 + ECD_03838 0.15 +1.0 4,055,736 + ECD_03838 0.15 +0.2 4,055,736 + ECD_03838 0.15 +0.3 4,055,736 + ECD_03838 0.15 +0.5 4,055,736 + ECD_03838 0.15 +0.1 4,055,737 - ECD_03838 0.15 +0.5 4,055,737 - ECD_03838 0.15 +0.3 4,055,737 - ECD_03838 0.15 -0.7 4,055,737 - ECD_03838 0.15 -0.1 4,055,737 - ECD_03838 0.15 +1.1 4,055,737 - ECD_03838 0.15 +0.5 4,055,737 - ECD_03838 0.15 +0.6 4,055,737 - ECD_03838 0.15 -0.8 4,055,737 - ECD_03838 0.15 -0.3 4,055,737 - ECD_03838 0.15 -0.7 4,055,738 + ECD_03838 0.15 +0.3 4,055,739 - ECD_03838 0.16 -0.3 4,055,739 - ECD_03838 0.16 -0.3
Or see this region's nucleotide sequence