Strain Fitness in Escherichia coli BL21 around ECD_03680

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03678 and ECD_03679 are separated by 21 nucleotidesECD_03679 and ECD_03680 overlap by 4 nucleotidesECD_03680 and ECD_03681 are separated by 386 nucleotides ECD_03678: ECD_03678 - putative uroporphyrinogen III methyltransferase, at 3,878,131 to 3,879,336 _03678 ECD_03679: ECD_03679 - uroporphyrinogen III synthase, at 3,879,358 to 3,880,098 _03679 ECD_03680: ECD_03680 - hydroxymethylbilane synthase, at 3,880,095 to 3,881,036 _03680 ECD_03681: ECD_03681 - adenylate cyclase, at 3,881,423 to 3,883,969 _03681 Position (kb) 3880 3881 3882Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3879.173 kb on + strand, within ECD_03678at 3879.173 kb on + strand, within ECD_03678at 3879.174 kb on - strand, within ECD_03678at 3879.351 kb on - strandat 3879.359 kb on + strandat 3879.360 kb on - strandat 3879.364 kb on + strandat 3879.364 kb on + strandat 3879.364 kb on + strandat 3879.364 kb on + strandat 3879.365 kb on - strandat 3879.365 kb on - strandat 3879.365 kb on - strandat 3879.365 kb on - strandat 3879.374 kb on - strandat 3880.118 kb on - strandat 3881.044 kb on - strandat 3881.053 kb on - strandat 3881.113 kb on - strandat 3881.113 kb on - strandat 3881.132 kb on - strandat 3881.179 kb on - strandat 3881.179 kb on - strandat 3881.179 kb on - strandat 3881.209 kb on + strandat 3881.209 kb on + strandat 3881.210 kb on - strandat 3881.217 kb on + strandat 3881.217 kb on + strandat 3881.217 kb on + strandat 3881.217 kb on + strandat 3881.217 kb on + strandat 3881.218 kb on - strandat 3881.218 kb on - strandat 3881.218 kb on - strandat 3881.218 kb on - strandat 3881.221 kb on + strandat 3881.221 kb on + strandat 3881.221 kb on + strandat 3881.222 kb on - strandat 3881.236 kb on + strandat 3881.340 kb on + strandat 3881.417 kb on + strandat 3881.426 kb on + strandat 3881.426 kb on + strandat 3881.432 kb on + strandat 3881.434 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,879,173 + ECD_03678 0.86 -0.4
3,879,173 + ECD_03678 0.86 -2.1
3,879,174 - ECD_03678 0.86 +1.1
3,879,351 - -0.4
3,879,359 + +1.1
3,879,360 - +0.6
3,879,364 + +1.4
3,879,364 + +3.4
3,879,364 + +0.7
3,879,364 + +2.4
3,879,365 - -0.7
3,879,365 - -0.0
3,879,365 - -0.6
3,879,365 - -1.2
3,879,374 - +0.2
3,880,118 - +0.5
3,881,044 - +0.3
3,881,053 - +0.3
3,881,113 - +2.2
3,881,113 - +0.1
3,881,132 - +0.7
3,881,179 - +0.7
3,881,179 - -0.0
3,881,179 - +0.6
3,881,209 + -0.7
3,881,209 + +0.0
3,881,210 - +0.5
3,881,217 + -0.4
3,881,217 + +0.6
3,881,217 + -0.1
3,881,217 + +0.1
3,881,217 + +0.1
3,881,218 - +0.2
3,881,218 - +0.5
3,881,218 - +0.8
3,881,218 - +1.0
3,881,221 + -0.4
3,881,221 + -0.3
3,881,221 + -1.0
3,881,222 - +0.8
3,881,236 + -0.4
3,881,340 + +0.0
3,881,417 + -0.6
3,881,426 + -0.6
3,881,426 + -0.6
3,881,432 + -0.1
3,881,434 + -1.4

Or see this region's nucleotide sequence