Strain Fitness in Escherichia coli BL21 around ECD_03589

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03586 and ECD_03587 are separated by 16 nucleotidesECD_03587 and ECD_03588 overlap by 37 nucleotidesECD_03588 and ECD_03589 are separated by 2 nucleotidesECD_03589 and ECD_03590 are separated by 105 nucleotides ECD_03586: ECD_03586 - 50S ribosomal subunit protein L34, at 3,773,132 to 3,773,272 _03586 ECD_03587: ECD_03587 - protein C5 component of RNase P, at 3,773,289 to 3,773,648 _03587 ECD_03588: ECD_03588 - membrane protein insertion efficiency factor, UPF0161 family inner membrane protein, at 3,773,612 to 3,773,869 _03588 ECD_03589: ECD_03589 - membrane protein insertase, at 3,773,872 to 3,775,518 _03589 ECD_03590: ECD_03590 - tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase, at 3,775,624 to 3,776,988 _03590 Position (kb) 3773 3774 3775 3776Strain fitness (log2 ratio) -1 0 1 2at 3772.899 kb on - strandat 3772.900 kb on + strandat 3772.901 kb on - strandat 3772.985 kb on - strandat 3772.989 kb on - strandat 3775.540 kb on + strandat 3775.642 kb on - strandat 3775.743 kb on - strandat 3775.743 kb on - strandat 3775.743 kb on - strandat 3775.743 kb on - strandat 3775.746 kb on + strandat 3775.905 kb on - strand, within ECD_03590at 3776.059 kb on - strand, within ECD_03590at 3776.059 kb on - strand, within ECD_03590at 3776.128 kb on + strand, within ECD_03590

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,772,899 - -0.9
3,772,900 + -0.2
3,772,901 - +1.5
3,772,985 - -0.5
3,772,989 - -0.0
3,775,540 + +0.9
3,775,642 - +0.4
3,775,743 - +1.0
3,775,743 - +1.7
3,775,743 - +1.4
3,775,743 - -1.2
3,775,746 + +2.7
3,775,905 - ECD_03590 0.21 -0.2
3,776,059 - ECD_03590 0.32 -1.6
3,776,059 - ECD_03590 0.32 +1.6
3,776,128 + ECD_03590 0.37 -0.2

Or see this region's nucleotide sequence