Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03586 and ECD_03587 are separated by 16 nucleotides ECD_03587 and ECD_03588 overlap by 37 nucleotides ECD_03588 and ECD_03589 are separated by 2 nucleotides ECD_03589 and ECD_03590 are separated by 105 nucleotides
ECD_03586: ECD_03586 - 50S ribosomal subunit protein L34, at 3,773,132 to 3,773,272
_03586
ECD_03587: ECD_03587 - protein C5 component of RNase P, at 3,773,289 to 3,773,648
_03587
ECD_03588: ECD_03588 - membrane protein insertion efficiency factor, UPF0161 family inner membrane protein, at 3,773,612 to 3,773,869
_03588
ECD_03589: ECD_03589 - membrane protein insertase, at 3,773,872 to 3,775,518
_03589
ECD_03590: ECD_03590 - tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase, at 3,775,624 to 3,776,988
_03590
Position (kb)
3773
3774
3775
3776 Strain fitness (log2 ratio)
-1
0
1
2 at 3772.899 kb on - strand at 3772.900 kb on + strand at 3772.901 kb on - strand at 3772.985 kb on - strand at 3772.989 kb on - strand at 3775.540 kb on + strand at 3775.642 kb on - strand at 3775.743 kb on - strand at 3775.743 kb on - strand at 3775.743 kb on - strand at 3775.743 kb on - strand at 3775.746 kb on + strand at 3775.905 kb on - strand, within ECD_03590 at 3776.059 kb on - strand, within ECD_03590 at 3776.059 kb on - strand, within ECD_03590 at 3776.128 kb on + strand, within ECD_03590
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,772,899 - -0.9 3,772,900 + -0.2 3,772,901 - +1.5 3,772,985 - -0.5 3,772,989 - -0.0 3,775,540 + +0.9 3,775,642 - +0.4 3,775,743 - +1.0 3,775,743 - +1.7 3,775,743 - +1.4 3,775,743 - -1.2 3,775,746 + +2.7 3,775,905 - ECD_03590 0.21 -0.2 3,776,059 - ECD_03590 0.32 -1.6 3,776,059 - ECD_03590 0.32 +1.6 3,776,128 + ECD_03590 0.37 -0.2
Or see this region's nucleotide sequence