Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03492 and ECD_03493 are separated by 97 nucleotides ECD_03493 and ECD_03494 are separated by 20 nucleotides ECD_03494 and ECD_03495 are separated by 216 nucleotides
ECD_03492: ECD_03492 - formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase, at 3,677,133 to 3,677,942
_03492
ECD_03493: ECD_03493 - 50S ribosomal subunit protein L33, at 3,678,040 to 3,678,207
_03493
ECD_03494: ECD_03494 - 50S ribosomal subunit protein L28, at 3,678,228 to 3,678,464
_03494
ECD_03495: ECD_03495 - UPF0758 family protein, at 3,678,681 to 3,679,349
_03495
Position (kb)
3678
3679 Strain fitness (log2 ratio)
-1
0
1 at 3677.267 kb on + strand, within ECD_03492 at 3677.300 kb on + strand, within ECD_03492 at 3677.431 kb on + strand, within ECD_03492 at 3677.432 kb on - strand, within ECD_03492 at 3677.432 kb on - strand, within ECD_03492 at 3677.435 kb on + strand, within ECD_03492 at 3677.435 kb on + strand, within ECD_03492 at 3677.436 kb on - strand, within ECD_03492 at 3677.518 kb on + strand, within ECD_03492 at 3677.572 kb on + strand, within ECD_03492 at 3677.573 kb on + strand, within ECD_03492 at 3677.574 kb on - strand, within ECD_03492 at 3677.574 kb on - strand, within ECD_03492 at 3677.727 kb on + strand, within ECD_03492 at 3677.728 kb on - strand, within ECD_03492 at 3677.738 kb on + strand, within ECD_03492 at 3677.738 kb on + strand, within ECD_03492 at 3677.770 kb on + strand, within ECD_03492 at 3677.770 kb on + strand, within ECD_03492 at 3677.792 kb on + strand, within ECD_03492 at 3677.792 kb on + strand, within ECD_03492 at 3677.942 kb on + strand at 3677.942 kb on + strand at 3677.943 kb on - strand at 3677.943 kb on - strand at 3678.713 kb on - strand at 3678.774 kb on + strand, within ECD_03495 at 3678.775 kb on - strand, within ECD_03495 at 3678.836 kb on + strand, within ECD_03495 at 3678.836 kb on + strand, within ECD_03495 at 3678.837 kb on - strand, within ECD_03495 at 3678.837 kb on - strand, within ECD_03495 at 3678.945 kb on + strand, within ECD_03495 at 3678.948 kb on - strand, within ECD_03495 at 3678.981 kb on - strand, within ECD_03495 at 3679.048 kb on - strand, within ECD_03495 at 3679.078 kb on + strand, within ECD_03495 at 3679.078 kb on + strand, within ECD_03495 at 3679.078 kb on + strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.082 kb on - strand, within ECD_03495 at 3679.110 kb on + strand, within ECD_03495 at 3679.111 kb on - strand, within ECD_03495 at 3679.162 kb on + strand, within ECD_03495 at 3679.162 kb on + strand, within ECD_03495 at 3679.224 kb on + strand, within ECD_03495 at 3679.225 kb on - strand, within ECD_03495 at 3679.227 kb on + strand, within ECD_03495 at 3679.227 kb on + strand, within ECD_03495 at 3679.227 kb on + strand, within ECD_03495 at 3679.227 kb on + strand, within ECD_03495 at 3679.228 kb on - strand, within ECD_03495 at 3679.228 kb on - strand, within ECD_03495 at 3679.228 kb on - strand, within ECD_03495 at 3679.228 kb on - strand, within ECD_03495
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,677,267 + ECD_03492 0.17 +0.6 3,677,300 + ECD_03492 0.21 +0.0 3,677,431 + ECD_03492 0.37 +0.4 3,677,432 - ECD_03492 0.37 +0.2 3,677,432 - ECD_03492 0.37 -0.6 3,677,435 + ECD_03492 0.37 -0.6 3,677,435 + ECD_03492 0.37 +0.7 3,677,436 - ECD_03492 0.37 +0.7 3,677,518 + ECD_03492 0.48 +0.4 3,677,572 + ECD_03492 0.54 +0.6 3,677,573 + ECD_03492 0.54 -0.4 3,677,574 - ECD_03492 0.54 -0.4 3,677,574 - ECD_03492 0.54 +0.4 3,677,727 + ECD_03492 0.73 +0.3 3,677,728 - ECD_03492 0.73 +0.5 3,677,738 + ECD_03492 0.75 -0.4 3,677,738 + ECD_03492 0.75 -0.0 3,677,770 + ECD_03492 0.79 -0.1 3,677,770 + ECD_03492 0.79 -0.0 3,677,792 + ECD_03492 0.81 +0.9 3,677,792 + ECD_03492 0.81 +0.1 3,677,942 + -0.2 3,677,942 + +0.4 3,677,943 - +0.1 3,677,943 - +0.2 3,678,713 - +0.0 3,678,774 + ECD_03495 0.14 +1.4 3,678,775 - ECD_03495 0.14 -1.4 3,678,836 + ECD_03495 0.23 -0.5 3,678,836 + ECD_03495 0.23 +0.6 3,678,837 - ECD_03495 0.23 +0.2 3,678,837 - ECD_03495 0.23 -0.1 3,678,945 + ECD_03495 0.39 +0.5 3,678,948 - ECD_03495 0.40 -0.4 3,678,981 - ECD_03495 0.45 -0.3 3,679,048 - ECD_03495 0.55 +1.4 3,679,078 + ECD_03495 0.59 +0.1 3,679,078 + ECD_03495 0.59 +1.0 3,679,078 + ECD_03495 0.59 +0.2 3,679,079 - ECD_03495 0.59 +0.7 3,679,079 - ECD_03495 0.59 +0.2 3,679,079 - ECD_03495 0.59 +0.9 3,679,079 - ECD_03495 0.59 +0.0 3,679,079 - ECD_03495 0.59 +0.2 3,679,079 - ECD_03495 0.59 +0.0 3,679,079 - ECD_03495 0.59 +0.4 3,679,082 - ECD_03495 0.60 +0.4 3,679,110 + ECD_03495 0.64 +0.8 3,679,111 - ECD_03495 0.64 -0.0 3,679,162 + ECD_03495 0.72 +0.8 3,679,162 + ECD_03495 0.72 +0.3 3,679,224 + ECD_03495 0.81 +0.8 3,679,225 - ECD_03495 0.81 -0.7 3,679,227 + ECD_03495 0.82 -0.1 3,679,227 + ECD_03495 0.82 -0.5 3,679,227 + ECD_03495 0.82 +0.4 3,679,227 + ECD_03495 0.82 -1.6 3,679,228 - ECD_03495 0.82 +0.4 3,679,228 - ECD_03495 0.82 +0.2 3,679,228 - ECD_03495 0.82 -0.1 3,679,228 - ECD_03495 0.82 -0.0
Or see this region's nucleotide sequence