Strain Fitness in Escherichia coli BL21 around ECD_03476

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03475 and ECD_03476 are separated by 213 nucleotidesECD_03476 and ECD_03477 are separated by 9 nucleotides ECD_03475: ECD_03475 - glycine C-acetyltransferase, at 3,660,556 to 3,661,752 _03475 ECD_03476: ECD_03476 - ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding, at 3,661,966 to 3,662,898 _03476 ECD_03477: ECD_03477 - ADP-heptose:LPS heptosyltransferase II, at 3,662,908 to 3,663,954 _03477 Position (kb) 3661 3662 3663Strain fitness (log2 ratio) -3 -2 -1 0 1at 3660.993 kb on + strand, within ECD_03475at 3660.996 kb on - strand, within ECD_03475at 3661.070 kb on + strand, within ECD_03475at 3661.071 kb on - strand, within ECD_03475at 3661.126 kb on + strand, within ECD_03475at 3661.126 kb on + strand, within ECD_03475at 3661.145 kb on + strand, within ECD_03475at 3661.145 kb on + strand, within ECD_03475at 3661.146 kb on - strand, within ECD_03475at 3661.146 kb on - strand, within ECD_03475at 3661.149 kb on + strand, within ECD_03475at 3661.149 kb on + strand, within ECD_03475at 3661.150 kb on - strand, within ECD_03475at 3661.150 kb on - strand, within ECD_03475at 3661.150 kb on - strand, within ECD_03475at 3661.150 kb on - strand, within ECD_03475at 3661.282 kb on - strand, within ECD_03475at 3661.309 kb on - strand, within ECD_03475at 3661.335 kb on + strand, within ECD_03475at 3661.336 kb on - strand, within ECD_03475at 3661.338 kb on + strand, within ECD_03475at 3661.366 kb on - strand, within ECD_03475at 3661.431 kb on - strand, within ECD_03475at 3661.598 kb on + strand, within ECD_03475at 3661.598 kb on + strand, within ECD_03475at 3661.598 kb on + strand, within ECD_03475at 3661.599 kb on - strand, within ECD_03475at 3661.599 kb on - strand, within ECD_03475at 3661.648 kb on - strandat 3661.648 kb on - strandat 3661.648 kb on - strandat 3661.668 kb on + strandat 3661.669 kb on - strandat 3661.669 kb on - strandat 3661.669 kb on - strandat 3661.786 kb on + strandat 3661.786 kb on + strandat 3661.786 kb on + strandat 3661.787 kb on - strandat 3661.787 kb on - strandat 3661.787 kb on - strandat 3661.787 kb on - strandat 3661.801 kb on + strandat 3661.802 kb on - strandat 3661.851 kb on + strandat 3661.851 kb on + strandat 3661.852 kb on - strandat 3661.906 kb on + strandat 3661.911 kb on + strandat 3661.911 kb on + strandat 3661.917 kb on + strandat 3661.917 kb on + strandat 3661.917 kb on + strandat 3661.947 kb on + strandat 3663.266 kb on + strand, within ECD_03477at 3663.511 kb on + strand, within ECD_03477

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
3,660,993 + ECD_03475 0.37 +0.6
3,660,996 - ECD_03475 0.37 +0.9
3,661,070 + ECD_03475 0.43 +1.0
3,661,071 - ECD_03475 0.43 +0.1
3,661,126 + ECD_03475 0.48 -0.2
3,661,126 + ECD_03475 0.48 -0.6
3,661,145 + ECD_03475 0.49 +0.1
3,661,145 + ECD_03475 0.49 -0.4
3,661,146 - ECD_03475 0.49 -0.3
3,661,146 - ECD_03475 0.49 -0.0
3,661,149 + ECD_03475 0.50 +0.9
3,661,149 + ECD_03475 0.50 +1.2
3,661,150 - ECD_03475 0.50 -0.0
3,661,150 - ECD_03475 0.50 -0.3
3,661,150 - ECD_03475 0.50 +0.8
3,661,150 - ECD_03475 0.50 +0.4
3,661,282 - ECD_03475 0.61 -0.7
3,661,309 - ECD_03475 0.63 +0.5
3,661,335 + ECD_03475 0.65 +0.1
3,661,336 - ECD_03475 0.65 -0.1
3,661,338 + ECD_03475 0.65 +0.4
3,661,366 - ECD_03475 0.68 +0.2
3,661,431 - ECD_03475 0.73 +0.2
3,661,598 + ECD_03475 0.87 +0.2
3,661,598 + ECD_03475 0.87 +0.8
3,661,598 + ECD_03475 0.87 -0.1
3,661,599 - ECD_03475 0.87 +0.4
3,661,599 - ECD_03475 0.87 +0.4
3,661,648 - +0.0
3,661,648 - -0.4
3,661,648 - -0.4
3,661,668 + +0.7
3,661,669 - -2.0
3,661,669 - -0.3
3,661,669 - -2.9
3,661,786 + -0.3
3,661,786 + -1.8
3,661,786 + -2.6
3,661,787 - +0.0
3,661,787 - +0.3
3,661,787 - -0.5
3,661,787 - +0.9
3,661,801 + +0.9
3,661,802 - -0.3
3,661,851 + +0.1
3,661,851 + +0.0
3,661,852 - +0.2
3,661,906 + -0.5
3,661,911 + -0.2
3,661,911 + +0.7
3,661,917 + -1.0
3,661,917 + +0.2
3,661,917 + -1.9
3,661,947 + +1.2
3,663,266 + ECD_03477 0.34 -0.2
3,663,511 + ECD_03477 0.58 +1.0

Or see this region's nucleotide sequence