Strain Fitness in Escherichia coli BL21 around ECD_03413

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03411 and ECD_03412 are separated by 94 nucleotidesECD_03412 and ECD_03413 are separated by 174 nucleotidesECD_03413 and ECD_03414 are separated by 41 nucleotidesECD_03414 and ECD_03415 are separated by 45 nucleotides ECD_03411: ECD_03411 - glycine tRNA synthetase, alpha subunit, at 3,586,561 to 3,587,472 _03411 ECD_03412: ECD_03412 - uncharacterized protein, at 3,587,567 to 3,587,866 _03412 ECD_03413: ECD_03413 - O-acetyltransferase for enterobacterial common antigen (ECA), at 3,588,041 to 3,589,036 _03413 ECD_03414: ECD_03414 - YiaAB family inner membrane protein, tandem domains, at 3,589,078 to 3,589,515 _03414 ECD_03415: ECD_03415 - YiaAB family inner membrane protein, at 3,589,561 to 3,589,902 _03415 Position (kb) 3588 3589 3590Strain fitness (log2 ratio) -1 0 1 2at 3587.539 kb on + strandat 3587.540 kb on - strandat 3587.540 kb on - strandat 3587.540 kb on - strandat 3587.545 kb on - strandat 3587.639 kb on - strand, within ECD_03412at 3587.655 kb on + strand, within ECD_03412at 3587.809 kb on + strand, within ECD_03412at 3587.809 kb on + strand, within ECD_03412at 3587.822 kb on + strand, within ECD_03412at 3587.822 kb on + strand, within ECD_03412at 3587.823 kb on - strand, within ECD_03412at 3587.823 kb on - strand, within ECD_03412at 3587.823 kb on - strand, within ECD_03412at 3587.904 kb on + strandat 3587.904 kb on + strandat 3587.904 kb on + strandat 3587.905 kb on - strandat 3587.912 kb on + strandat 3587.914 kb on + strandat 3587.914 kb on + strandat 3587.914 kb on + strandat 3587.925 kb on - strandat 3587.930 kb on - strandat 3587.949 kb on + strandat 3587.964 kb on + strandat 3587.977 kb on - strandat 3588.028 kb on + strandat 3588.122 kb on + strandat 3588.122 kb on + strandat 3588.123 kb on - strandat 3588.139 kb on + strandat 3588.140 kb on - strandat 3588.283 kb on - strand, within ECD_03413at 3588.283 kb on - strand, within ECD_03413at 3588.317 kb on + strand, within ECD_03413at 3588.328 kb on - strand, within ECD_03413at 3588.332 kb on - strand, within ECD_03413at 3588.351 kb on + strand, within ECD_03413at 3588.386 kb on + strand, within ECD_03413at 3588.393 kb on + strand, within ECD_03413at 3588.394 kb on - strand, within ECD_03413at 3588.394 kb on - strand, within ECD_03413at 3588.422 kb on + strand, within ECD_03413at 3588.422 kb on + strand, within ECD_03413at 3588.486 kb on + strand, within ECD_03413at 3588.496 kb on + strand, within ECD_03413at 3588.497 kb on - strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.561 kb on + strand, within ECD_03413at 3588.562 kb on - strand, within ECD_03413at 3588.562 kb on - strand, within ECD_03413at 3588.562 kb on - strand, within ECD_03413at 3588.564 kb on - strand, within ECD_03413at 3588.564 kb on - strand, within ECD_03413at 3588.565 kb on + strand, within ECD_03413at 3588.566 kb on - strand, within ECD_03413at 3588.566 kb on - strand, within ECD_03413at 3588.566 kb on - strand, within ECD_03413at 3588.587 kb on + strand, within ECD_03413at 3588.618 kb on + strand, within ECD_03413at 3588.619 kb on - strand, within ECD_03413at 3588.708 kb on + strand, within ECD_03413at 3588.708 kb on + strand, within ECD_03413at 3588.708 kb on + strand, within ECD_03413at 3588.709 kb on - strand, within ECD_03413at 3588.709 kb on - strand, within ECD_03413at 3588.709 kb on - strand, within ECD_03413at 3588.709 kb on - strand, within ECD_03413at 3588.709 kb on - strand, within ECD_03413at 3588.710 kb on + strand, within ECD_03413at 3588.755 kb on + strand, within ECD_03413at 3588.755 kb on + strand, within ECD_03413at 3588.826 kb on + strand, within ECD_03413at 3588.872 kb on + strand, within ECD_03413at 3588.872 kb on + strand, within ECD_03413at 3588.949 kb on + strandat 3588.949 kb on + strandat 3588.949 kb on + strandat 3588.988 kb on - strandat 3588.994 kb on + strandat 3588.994 kb on + strandat 3588.995 kb on - strandat 3589.002 kb on + strandat 3589.002 kb on + strandat 3589.003 kb on - strandat 3589.039 kb on - strandat 3589.071 kb on - strandat 3589.241 kb on - strand, within ECD_03414at 3589.241 kb on - strand, within ECD_03414at 3589.263 kb on + strand, within ECD_03414at 3589.264 kb on - strand, within ECD_03414at 3589.264 kb on - strand, within ECD_03414at 3589.266 kb on + strand, within ECD_03414at 3589.287 kb on + strand, within ECD_03414at 3589.290 kb on - strand, within ECD_03414at 3589.290 kb on - strand, within ECD_03414at 3589.319 kb on + strand, within ECD_03414at 3589.320 kb on - strand, within ECD_03414at 3589.344 kb on - strand, within ECD_03414at 3589.436 kb on + strand, within ECD_03414at 3589.436 kb on + strand, within ECD_03414at 3589.436 kb on + strand, within ECD_03414at 3589.440 kb on + strand, within ECD_03414at 3589.479 kb on + strandat 3589.480 kb on - strandat 3589.540 kb on + strandat 3589.545 kb on - strandat 3589.545 kb on - strandat 3589.545 kb on - strandat 3589.553 kb on + strandat 3589.553 kb on + strandat 3589.638 kb on + strand, within ECD_03415at 3589.639 kb on - strand, within ECD_03415at 3589.697 kb on - strand, within ECD_03415at 3589.760 kb on + strand, within ECD_03415at 3589.760 kb on + strand, within ECD_03415at 3589.760 kb on + strand, within ECD_03415at 3589.760 kb on + strand, within ECD_03415at 3589.914 kb on + strandat 3589.918 kb on + strandat 3589.927 kb on + strandat 3589.933 kb on - strandat 3590.008 kb on + strandat 3590.024 kb on + strandat 3590.028 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,587,539 + -0.7
3,587,540 - -0.6
3,587,540 - -0.6
3,587,540 - +1.3
3,587,545 - +0.2
3,587,639 - ECD_03412 0.24 +0.5
3,587,655 + ECD_03412 0.29 +1.3
3,587,809 + ECD_03412 0.81 +0.2
3,587,809 + ECD_03412 0.81 -0.4
3,587,822 + ECD_03412 0.85 -0.4
3,587,822 + ECD_03412 0.85 +0.7
3,587,823 - ECD_03412 0.85 -0.7
3,587,823 - ECD_03412 0.85 +0.6
3,587,823 - ECD_03412 0.85 -0.0
3,587,904 + +0.4
3,587,904 + +0.5
3,587,904 + +0.2
3,587,905 - -0.2
3,587,912 + -1.0
3,587,914 + +0.1
3,587,914 + +0.1
3,587,914 + +1.4
3,587,925 - +1.0
3,587,930 - -0.4
3,587,949 + -0.8
3,587,964 + -0.4
3,587,977 - +0.1
3,588,028 + +0.4
3,588,122 + -0.1
3,588,122 + +1.0
3,588,123 - -0.0
3,588,139 + +0.5
3,588,140 - +0.4
3,588,283 - ECD_03413 0.24 +0.5
3,588,283 - ECD_03413 0.24 -0.0
3,588,317 + ECD_03413 0.28 +0.2
3,588,328 - ECD_03413 0.29 +0.7
3,588,332 - ECD_03413 0.29 -0.7
3,588,351 + ECD_03413 0.31 +1.4
3,588,386 + ECD_03413 0.35 -1.1
3,588,393 + ECD_03413 0.35 -0.5
3,588,394 - ECD_03413 0.35 +0.2
3,588,394 - ECD_03413 0.35 +0.2
3,588,422 + ECD_03413 0.38 -0.1
3,588,422 + ECD_03413 0.38 -0.6
3,588,486 + ECD_03413 0.45 +0.7
3,588,496 + ECD_03413 0.46 +0.2
3,588,497 - ECD_03413 0.46 +0.4
3,588,561 + ECD_03413 0.52 +0.3
3,588,561 + ECD_03413 0.52 +0.3
3,588,561 + ECD_03413 0.52 +1.4
3,588,561 + ECD_03413 0.52 +0.5
3,588,561 + ECD_03413 0.52 +0.2
3,588,561 + ECD_03413 0.52 +0.1
3,588,561 + ECD_03413 0.52 -0.3
3,588,561 + ECD_03413 0.52 -0.2
3,588,561 + ECD_03413 0.52 -0.4
3,588,562 - ECD_03413 0.52 +1.1
3,588,562 - ECD_03413 0.52 -0.4
3,588,562 - ECD_03413 0.52 +0.1
3,588,564 - ECD_03413 0.53 -0.2
3,588,564 - ECD_03413 0.53 +0.9
3,588,565 + ECD_03413 0.53 +0.1
3,588,566 - ECD_03413 0.53 +1.4
3,588,566 - ECD_03413 0.53 +0.1
3,588,566 - ECD_03413 0.53 +1.6
3,588,587 + ECD_03413 0.55 +0.4
3,588,618 + ECD_03413 0.58 -0.8
3,588,619 - ECD_03413 0.58 +1.0
3,588,708 + ECD_03413 0.67 +0.1
3,588,708 + ECD_03413 0.67 -0.2
3,588,708 + ECD_03413 0.67 +1.0
3,588,709 - ECD_03413 0.67 -0.8
3,588,709 - ECD_03413 0.67 -0.5
3,588,709 - ECD_03413 0.67 +0.1
3,588,709 - ECD_03413 0.67 +1.3
3,588,709 - ECD_03413 0.67 -0.5
3,588,710 + ECD_03413 0.67 +1.4
3,588,755 + ECD_03413 0.72 -0.8
3,588,755 + ECD_03413 0.72 +0.7
3,588,826 + ECD_03413 0.79 +0.6
3,588,872 + ECD_03413 0.83 +0.5
3,588,872 + ECD_03413 0.83 +0.0
3,588,949 + +0.4
3,588,949 + +0.1
3,588,949 + -0.2
3,588,988 - -0.4
3,588,994 + +0.5
3,588,994 + -0.5
3,588,995 - -1.2
3,589,002 + -0.2
3,589,002 + -0.0
3,589,003 - +0.4
3,589,039 - +0.9
3,589,071 - -0.7
3,589,241 - ECD_03414 0.37 -0.2
3,589,241 - ECD_03414 0.37 -0.3
3,589,263 + ECD_03414 0.42 +0.0
3,589,264 - ECD_03414 0.42 -0.1
3,589,264 - ECD_03414 0.42 +0.5
3,589,266 + ECD_03414 0.43 -0.3
3,589,287 + ECD_03414 0.48 -0.1
3,589,290 - ECD_03414 0.48 +0.2
3,589,290 - ECD_03414 0.48 -0.6
3,589,319 + ECD_03414 0.55 -0.3
3,589,320 - ECD_03414 0.55 -0.4
3,589,344 - ECD_03414 0.61 +0.1
3,589,436 + ECD_03414 0.82 -0.1
3,589,436 + ECD_03414 0.82 -0.0
3,589,436 + ECD_03414 0.82 +0.1
3,589,440 + ECD_03414 0.83 -0.5
3,589,479 + -0.5
3,589,480 - +0.4
3,589,540 + +0.2
3,589,545 - +0.1
3,589,545 - +0.4
3,589,545 - -0.0
3,589,553 + -0.1
3,589,553 + -0.3
3,589,638 + ECD_03415 0.23 -1.7
3,589,639 - ECD_03415 0.23 -0.0
3,589,697 - ECD_03415 0.40 -0.8
3,589,760 + ECD_03415 0.58 -0.3
3,589,760 + ECD_03415 0.58 -0.7
3,589,760 + ECD_03415 0.58 -0.3
3,589,760 + ECD_03415 0.58 -1.2
3,589,914 + -0.1
3,589,918 + +0.5
3,589,927 + +0.7
3,589,933 - -0.1
3,590,008 + -0.2
3,590,024 + -0.3
3,590,028 + +2.6

Or see this region's nucleotide sequence