Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03387 and ECD_03388 are separated by 375 nucleotides ECD_03388 and ECD_03389 are separated by 375 nucleotides ECD_03389 and ECD_03390 are separated by 475 nucleotides
ECD_03387: ECD_03387 - toxic polypeptide, small, at 3,561,168 to 3,561,275
_03387
ECD_03388: ECD_03388 - toxic polypeptide, small, at 3,561,651 to 3,561,758
_03388
ECD_03389: ECD_03389 - toxic polypeptide, small, at 3,562,134 to 3,562,241
_03389
ECD_03390: ECD_03390 - putative transporter, at 3,562,717 to 3,563,988
_03390
Position (kb)
3562
3563 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3561.277 kb on + strand at 3561.292 kb on + strand at 3561.292 kb on + strand at 3561.293 kb on - strand at 3561.293 kb on - strand at 3561.293 kb on - strand at 3561.293 kb on - strand at 3561.327 kb on + strand at 3561.472 kb on + strand at 3561.536 kb on - strand at 3561.758 kb on + strand at 3561.760 kb on + strand at 3561.775 kb on + strand at 3561.803 kb on + strand at 3561.804 kb on - strand at 3561.849 kb on - strand at 3561.956 kb on - strand at 3562.258 kb on + strand at 3562.258 kb on + strand at 3562.258 kb on + strand at 3562.278 kb on + strand at 3562.332 kb on - strand at 3562.332 kb on - strand at 3562.332 kb on - strand at 3562.438 kb on + strand at 3562.438 kb on + strand at 3562.500 kb on - strand at 3562.628 kb on + strand at 3562.635 kb on + strand at 3562.716 kb on + strand at 3562.717 kb on - strand at 3562.769 kb on - strand at 3562.787 kb on + strand at 3562.787 kb on + strand at 3562.796 kb on + strand at 3562.796 kb on + strand at 3562.797 kb on - strand at 3562.951 kb on - strand, within ECD_03390 at 3562.957 kb on + strand, within ECD_03390 at 3562.957 kb on + strand, within ECD_03390 at 3562.957 kb on + strand, within ECD_03390 at 3562.958 kb on - strand, within ECD_03390 at 3562.969 kb on - strand, within ECD_03390 at 3562.969 kb on - strand, within ECD_03390 at 3562.969 kb on - strand, within ECD_03390 at 3563.137 kb on - strand, within ECD_03390 at 3563.189 kb on + strand, within ECD_03390 at 3563.228 kb on + strand, within ECD_03390
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,561,277 + +0.1 3,561,292 + -0.4 3,561,292 + -0.9 3,561,293 - +1.1 3,561,293 - +0.1 3,561,293 - +0.3 3,561,293 - +0.0 3,561,327 + +0.7 3,561,472 + +0.2 3,561,536 - +0.3 3,561,758 + +0.9 3,561,760 + +2.1 3,561,775 + +0.2 3,561,803 + +0.2 3,561,804 - +0.6 3,561,849 - +0.4 3,561,956 - +2.1 3,562,258 + +0.6 3,562,258 + +0.8 3,562,258 + +2.2 3,562,278 + -0.4 3,562,332 - +0.1 3,562,332 - +0.2 3,562,332 - -0.2 3,562,438 + +0.2 3,562,438 + -0.2 3,562,500 - -0.2 3,562,628 + +0.4 3,562,635 + +0.1 3,562,716 + +1.2 3,562,717 - +0.0 3,562,769 - -0.1 3,562,787 + +0.6 3,562,787 + -0.2 3,562,796 + +0.3 3,562,796 + -0.1 3,562,797 - +0.1 3,562,951 - ECD_03390 0.18 -0.4 3,562,957 + ECD_03390 0.19 +1.5 3,562,957 + ECD_03390 0.19 -0.0 3,562,957 + ECD_03390 0.19 -1.2 3,562,958 - ECD_03390 0.19 -3.4 3,562,969 - ECD_03390 0.20 -0.0 3,562,969 - ECD_03390 0.20 -0.6 3,562,969 - ECD_03390 0.20 -0.0 3,563,137 - ECD_03390 0.33 +0.6 3,563,189 + ECD_03390 0.37 -0.3 3,563,228 + ECD_03390 0.40 +0.3
Or see this region's nucleotide sequence