Strain Fitness in Escherichia coli BL21 around ECD_03389

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03387 and ECD_03388 are separated by 375 nucleotidesECD_03388 and ECD_03389 are separated by 375 nucleotidesECD_03389 and ECD_03390 are separated by 475 nucleotides ECD_03387: ECD_03387 - toxic polypeptide, small, at 3,561,168 to 3,561,275 _03387 ECD_03388: ECD_03388 - toxic polypeptide, small, at 3,561,651 to 3,561,758 _03388 ECD_03389: ECD_03389 - toxic polypeptide, small, at 3,562,134 to 3,562,241 _03389 ECD_03390: ECD_03390 - putative transporter, at 3,562,717 to 3,563,988 _03390 Position (kb) 3562 3563Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3561.277 kb on + strandat 3561.292 kb on + strandat 3561.292 kb on + strandat 3561.293 kb on - strandat 3561.293 kb on - strandat 3561.293 kb on - strandat 3561.293 kb on - strandat 3561.327 kb on + strandat 3561.472 kb on + strandat 3561.536 kb on - strandat 3561.758 kb on + strandat 3561.760 kb on + strandat 3561.775 kb on + strandat 3561.803 kb on + strandat 3561.804 kb on - strandat 3561.849 kb on - strandat 3561.956 kb on - strandat 3562.258 kb on + strandat 3562.258 kb on + strandat 3562.258 kb on + strandat 3562.278 kb on + strandat 3562.332 kb on - strandat 3562.332 kb on - strandat 3562.332 kb on - strandat 3562.438 kb on + strandat 3562.438 kb on + strandat 3562.500 kb on - strandat 3562.628 kb on + strandat 3562.635 kb on + strandat 3562.716 kb on + strandat 3562.717 kb on - strandat 3562.769 kb on - strandat 3562.787 kb on + strandat 3562.787 kb on + strandat 3562.796 kb on + strandat 3562.796 kb on + strandat 3562.797 kb on - strandat 3562.951 kb on - strand, within ECD_03390at 3562.957 kb on + strand, within ECD_03390at 3562.957 kb on + strand, within ECD_03390at 3562.957 kb on + strand, within ECD_03390at 3562.958 kb on - strand, within ECD_03390at 3562.969 kb on - strand, within ECD_03390at 3562.969 kb on - strand, within ECD_03390at 3562.969 kb on - strand, within ECD_03390at 3563.137 kb on - strand, within ECD_03390at 3563.189 kb on + strand, within ECD_03390at 3563.228 kb on + strand, within ECD_03390

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,561,277 + +0.1
3,561,292 + -0.4
3,561,292 + -0.9
3,561,293 - +1.1
3,561,293 - +0.1
3,561,293 - +0.3
3,561,293 - +0.0
3,561,327 + +0.7
3,561,472 + +0.2
3,561,536 - +0.3
3,561,758 + +0.9
3,561,760 + +2.1
3,561,775 + +0.2
3,561,803 + +0.2
3,561,804 - +0.6
3,561,849 - +0.4
3,561,956 - +2.1
3,562,258 + +0.6
3,562,258 + +0.8
3,562,258 + +2.2
3,562,278 + -0.4
3,562,332 - +0.1
3,562,332 - +0.2
3,562,332 - -0.2
3,562,438 + +0.2
3,562,438 + -0.2
3,562,500 - -0.2
3,562,628 + +0.4
3,562,635 + +0.1
3,562,716 + +1.2
3,562,717 - +0.0
3,562,769 - -0.1
3,562,787 + +0.6
3,562,787 + -0.2
3,562,796 + +0.3
3,562,796 + -0.1
3,562,797 - +0.1
3,562,951 - ECD_03390 0.18 -0.4
3,562,957 + ECD_03390 0.19 +1.5
3,562,957 + ECD_03390 0.19 -0.0
3,562,957 + ECD_03390 0.19 -1.2
3,562,958 - ECD_03390 0.19 -3.4
3,562,969 - ECD_03390 0.20 -0.0
3,562,969 - ECD_03390 0.20 -0.6
3,562,969 - ECD_03390 0.20 -0.0
3,563,137 - ECD_03390 0.33 +0.6
3,563,189 + ECD_03390 0.37 -0.3
3,563,228 + ECD_03390 0.40 +0.3

Or see this region's nucleotide sequence