Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03373 and ECD_03374 are separated by 231 nucleotides ECD_03374 and ECD_03375 are separated by 95 nucleotides
ECD_03373: ECD_03373 - cyclic-di-GMP phosphodiesterase, FlhDC-regulated, at 3,539,608 to 3,540,375
_03373
ECD_03374: ECD_03374 - 2-dehydro-3-deoxygluconokinase, at 3,540,607 to 3,541,536
_03374
ECD_03375: ECD_03375 - putative periplasmic M16 family chaperone, at 3,541,632 to 3,543,128
_03375
Position (kb)
3540
3541
3542 Strain fitness (log2 ratio)
-2
-1
0
1 at 3539.609 kb on + strand at 3539.610 kb on - strand at 3539.642 kb on - strand at 3539.726 kb on - strand, within ECD_03373 at 3539.753 kb on + strand, within ECD_03373 at 3539.753 kb on + strand, within ECD_03373 at 3539.764 kb on + strand, within ECD_03373 at 3539.764 kb on + strand, within ECD_03373 at 3539.764 kb on + strand, within ECD_03373 at 3539.764 kb on + strand, within ECD_03373 at 3539.764 kb on + strand, within ECD_03373 at 3539.765 kb on - strand, within ECD_03373 at 3539.765 kb on - strand, within ECD_03373 at 3539.770 kb on + strand, within ECD_03373 at 3539.770 kb on + strand, within ECD_03373 at 3539.771 kb on - strand, within ECD_03373 at 3539.771 kb on - strand, within ECD_03373 at 3539.846 kb on + strand, within ECD_03373 at 3539.846 kb on + strand, within ECD_03373 at 3539.846 kb on + strand, within ECD_03373 at 3539.847 kb on - strand, within ECD_03373 at 3539.847 kb on - strand, within ECD_03373 at 3539.847 kb on - strand, within ECD_03373 at 3539.847 kb on - strand, within ECD_03373 at 3539.847 kb on - strand, within ECD_03373 at 3539.852 kb on + strand, within ECD_03373 at 3540.048 kb on + strand, within ECD_03373 at 3540.089 kb on - strand, within ECD_03373 at 3540.089 kb on - strand, within ECD_03373 at 3540.091 kb on - strand, within ECD_03373 at 3540.169 kb on - strand, within ECD_03373 at 3540.174 kb on - strand, within ECD_03373 at 3540.229 kb on + strand, within ECD_03373 at 3540.230 kb on - strand, within ECD_03373 at 3540.264 kb on - strand, within ECD_03373 at 3540.281 kb on + strand, within ECD_03373 at 3540.281 kb on + strand, within ECD_03373 at 3540.282 kb on - strand, within ECD_03373 at 3540.282 kb on - strand, within ECD_03373 at 3540.282 kb on - strand, within ECD_03373 at 3540.282 kb on - strand, within ECD_03373 at 3540.350 kb on - strand at 3540.370 kb on + strand at 3540.371 kb on - strand at 3540.371 kb on - strand at 3540.393 kb on + strand at 3540.425 kb on + strand at 3540.574 kb on - strand at 3540.607 kb on - strand at 3540.607 kb on - strand at 3540.607 kb on - strand at 3540.712 kb on + strand, within ECD_03374 at 3540.712 kb on + strand, within ECD_03374 at 3540.712 kb on + strand, within ECD_03374 at 3540.712 kb on + strand, within ECD_03374 at 3540.713 kb on - strand, within ECD_03374 at 3540.754 kb on + strand, within ECD_03374 at 3540.754 kb on + strand, within ECD_03374 at 3540.783 kb on + strand, within ECD_03374 at 3540.825 kb on + strand, within ECD_03374 at 3540.826 kb on - strand, within ECD_03374 at 3540.826 kb on - strand, within ECD_03374 at 3540.868 kb on + strand, within ECD_03374 at 3540.869 kb on - strand, within ECD_03374 at 3540.871 kb on + strand, within ECD_03374 at 3540.871 kb on + strand, within ECD_03374 at 3540.872 kb on - strand, within ECD_03374 at 3540.872 kb on - strand, within ECD_03374 at 3540.872 kb on - strand, within ECD_03374 at 3540.901 kb on - strand, within ECD_03374 at 3540.907 kb on + strand, within ECD_03374 at 3540.908 kb on - strand, within ECD_03374 at 3540.908 kb on - strand, within ECD_03374 at 3540.911 kb on - strand, within ECD_03374 at 3540.995 kb on - strand, within ECD_03374 at 3541.108 kb on - strand, within ECD_03374 at 3541.108 kb on - strand, within ECD_03374 at 3541.111 kb on + strand, within ECD_03374 at 3541.111 kb on + strand, within ECD_03374 at 3541.112 kb on - strand, within ECD_03374 at 3541.112 kb on - strand, within ECD_03374 at 3541.482 kb on + strand at 3541.482 kb on + strand at 3541.545 kb on + strand at 3541.546 kb on - strand at 3541.592 kb on + strand at 3541.593 kb on - strand at 3541.596 kb on + strand at 3541.597 kb on - strand at 3541.597 kb on - strand at 3541.612 kb on + strand at 3541.634 kb on - strand at 3541.634 kb on - strand at 3541.668 kb on + strand at 3541.668 kb on + strand at 3541.668 kb on + strand at 3541.669 kb on - strand at 3541.669 kb on - strand at 3541.785 kb on + strand, within ECD_03375 at 3541.786 kb on - strand, within ECD_03375 at 3541.788 kb on + strand, within ECD_03375 at 3541.850 kb on + strand, within ECD_03375 at 3541.851 kb on - strand, within ECD_03375 at 3541.879 kb on + strand, within ECD_03375 at 3541.880 kb on - strand, within ECD_03375 at 3541.963 kb on + strand, within ECD_03375 at 3542.008 kb on - strand, within ECD_03375 at 3542.076 kb on - strand, within ECD_03375 at 3542.301 kb on - strand, within ECD_03375 at 3542.301 kb on - strand, within ECD_03375 at 3542.333 kb on + strand, within ECD_03375 at 3542.333 kb on + strand, within ECD_03375 at 3542.334 kb on - strand, within ECD_03375 at 3542.334 kb on - strand, within ECD_03375 at 3542.336 kb on + strand, within ECD_03375 at 3542.336 kb on + strand, within ECD_03375 at 3542.336 kb on + strand, within ECD_03375 at 3542.337 kb on - strand, within ECD_03375 at 3542.337 kb on - strand, within ECD_03375 at 3542.424 kb on + strand, within ECD_03375 at 3542.492 kb on - strand, within ECD_03375 at 3542.492 kb on - strand, within ECD_03375
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,539,609 + -0.3 3,539,610 - -0.1 3,539,642 - -0.1 3,539,726 - ECD_03373 0.15 -0.1 3,539,753 + ECD_03373 0.19 -0.5 3,539,753 + ECD_03373 0.19 -0.1 3,539,764 + ECD_03373 0.20 -0.5 3,539,764 + ECD_03373 0.20 +0.2 3,539,764 + ECD_03373 0.20 -0.3 3,539,764 + ECD_03373 0.20 -1.1 3,539,764 + ECD_03373 0.20 -0.1 3,539,765 - ECD_03373 0.20 -0.0 3,539,765 - ECD_03373 0.20 +0.1 3,539,770 + ECD_03373 0.21 -0.1 3,539,770 + ECD_03373 0.21 +0.3 3,539,771 - ECD_03373 0.21 -0.3 3,539,771 - ECD_03373 0.21 -0.0 3,539,846 + ECD_03373 0.31 -1.6 3,539,846 + ECD_03373 0.31 -1.6 3,539,846 + ECD_03373 0.31 +0.0 3,539,847 - ECD_03373 0.31 -0.5 3,539,847 - ECD_03373 0.31 +1.4 3,539,847 - ECD_03373 0.31 +0.6 3,539,847 - ECD_03373 0.31 +0.4 3,539,847 - ECD_03373 0.31 +0.9 3,539,852 + ECD_03373 0.32 -0.2 3,540,048 + ECD_03373 0.57 -0.5 3,540,089 - ECD_03373 0.63 +0.4 3,540,089 - ECD_03373 0.63 -1.9 3,540,091 - ECD_03373 0.63 -0.3 3,540,169 - ECD_03373 0.73 -0.6 3,540,174 - ECD_03373 0.74 -0.1 3,540,229 + ECD_03373 0.81 -0.2 3,540,230 - ECD_03373 0.81 +1.4 3,540,264 - ECD_03373 0.85 -0.7 3,540,281 + ECD_03373 0.88 +0.5 3,540,281 + ECD_03373 0.88 -1.3 3,540,282 - ECD_03373 0.88 +0.9 3,540,282 - ECD_03373 0.88 -0.1 3,540,282 - ECD_03373 0.88 +1.4 3,540,282 - ECD_03373 0.88 -0.6 3,540,350 - +0.5 3,540,370 + -0.4 3,540,371 - +0.5 3,540,371 - -0.6 3,540,393 + +0.4 3,540,425 + -0.9 3,540,574 - -0.0 3,540,607 - -1.0 3,540,607 - +0.3 3,540,607 - -0.2 3,540,712 + ECD_03374 0.11 -0.6 3,540,712 + ECD_03374 0.11 -0.1 3,540,712 + ECD_03374 0.11 -0.0 3,540,712 + ECD_03374 0.11 -0.3 3,540,713 - ECD_03374 0.11 +0.0 3,540,754 + ECD_03374 0.16 -0.1 3,540,754 + ECD_03374 0.16 -0.7 3,540,783 + ECD_03374 0.19 +0.8 3,540,825 + ECD_03374 0.23 -0.2 3,540,826 - ECD_03374 0.24 +0.2 3,540,826 - ECD_03374 0.24 +0.6 3,540,868 + ECD_03374 0.28 -0.3 3,540,869 - ECD_03374 0.28 -0.8 3,540,871 + ECD_03374 0.28 +0.3 3,540,871 + ECD_03374 0.28 -0.5 3,540,872 - ECD_03374 0.28 -0.6 3,540,872 - ECD_03374 0.28 +0.0 3,540,872 - ECD_03374 0.28 -0.0 3,540,901 - ECD_03374 0.32 +0.0 3,540,907 + ECD_03374 0.32 -0.1 3,540,908 - ECD_03374 0.32 -0.5 3,540,908 - ECD_03374 0.32 +0.8 3,540,911 - ECD_03374 0.33 -0.6 3,540,995 - ECD_03374 0.42 -0.5 3,541,108 - ECD_03374 0.54 +0.1 3,541,108 - ECD_03374 0.54 -0.6 3,541,111 + ECD_03374 0.54 -0.1 3,541,111 + ECD_03374 0.54 +0.9 3,541,112 - ECD_03374 0.54 -0.6 3,541,112 - ECD_03374 0.54 +0.6 3,541,482 + +0.5 3,541,482 + -0.3 3,541,545 + +0.3 3,541,546 - +0.5 3,541,592 + -0.8 3,541,593 - -0.6 3,541,596 + -0.6 3,541,597 - +1.2 3,541,597 - +0.4 3,541,612 + -1.2 3,541,634 - -0.9 3,541,634 - +1.0 3,541,668 + +0.3 3,541,668 + -0.8 3,541,668 + +0.6 3,541,669 - +0.9 3,541,669 - +0.1 3,541,785 + ECD_03375 0.10 -0.9 3,541,786 - ECD_03375 0.10 -0.2 3,541,788 + ECD_03375 0.10 -0.6 3,541,850 + ECD_03375 0.15 -1.1 3,541,851 - ECD_03375 0.15 -0.7 3,541,879 + ECD_03375 0.16 -0.1 3,541,880 - ECD_03375 0.17 +1.6 3,541,963 + ECD_03375 0.22 -0.4 3,542,008 - ECD_03375 0.25 +0.2 3,542,076 - ECD_03375 0.30 +0.2 3,542,301 - ECD_03375 0.45 -0.3 3,542,301 - ECD_03375 0.45 +0.5 3,542,333 + ECD_03375 0.47 -0.2 3,542,333 + ECD_03375 0.47 +1.1 3,542,334 - ECD_03375 0.47 +0.5 3,542,334 - ECD_03375 0.47 -0.3 3,542,336 + ECD_03375 0.47 +0.1 3,542,336 + ECD_03375 0.47 +0.3 3,542,336 + ECD_03375 0.47 +0.1 3,542,337 - ECD_03375 0.47 -0.1 3,542,337 - ECD_03375 0.47 +0.1 3,542,424 + ECD_03375 0.53 -0.5 3,542,492 - ECD_03375 0.57 -0.6 3,542,492 - ECD_03375 0.57 -0.3
Or see this region's nucleotide sequence