Strain Fitness in Escherichia coli BL21 around ECD_03361

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03360 and ECD_03361 are separated by 338 nucleotidesECD_03361 and ECD_03362 are separated by 24 nucleotides ECD_03360: ECD_03360 - gad regulon transcriptional activator, at 3,519,553 to 3,520,080 _03360 ECD_03361: ECD_03361 - anaerobic multidrug efflux transporter, ArcA-regulated, at 3,520,419 to 3,521,576 _03361 ECD_03362: ECD_03362 - anaerobic multidrug efflux transporter, ArcA-regulated, at 3,521,601 to 3,524,714 _03362 Position (kb) 3520 3521 3522Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3519.921 kb on + strand, within ECD_03360at 3520.014 kb on + strand, within ECD_03360at 3520.089 kb on + strandat 3520.089 kb on + strandat 3520.090 kb on - strandat 3520.090 kb on - strandat 3520.090 kb on - strandat 3520.182 kb on + strandat 3520.193 kb on + strandat 3520.193 kb on + strandat 3520.194 kb on - strandat 3520.194 kb on - strandat 3520.194 kb on - strandat 3520.194 kb on - strandat 3520.194 kb on - strandat 3520.199 kb on + strandat 3520.209 kb on + strandat 3520.315 kb on - strandat 3520.359 kb on + strandat 3520.359 kb on + strandat 3520.359 kb on + strandat 3520.360 kb on - strandat 3520.415 kb on + strandat 3520.593 kb on + strand, within ECD_03361at 3520.594 kb on - strand, within ECD_03361at 3520.609 kb on + strand, within ECD_03361at 3520.610 kb on - strand, within ECD_03361at 3520.610 kb on - strand, within ECD_03361at 3520.629 kb on - strand, within ECD_03361at 3520.631 kb on + strand, within ECD_03361at 3520.631 kb on + strand, within ECD_03361at 3520.708 kb on + strand, within ECD_03361at 3520.815 kb on + strand, within ECD_03361at 3520.815 kb on + strand, within ECD_03361at 3520.815 kb on + strand, within ECD_03361at 3520.816 kb on - strand, within ECD_03361at 3520.834 kb on - strand, within ECD_03361at 3520.947 kb on - strand, within ECD_03361at 3520.997 kb on + strand, within ECD_03361at 3521.023 kb on + strand, within ECD_03361at 3521.024 kb on - strand, within ECD_03361at 3521.024 kb on - strand, within ECD_03361at 3521.043 kb on + strand, within ECD_03361at 3521.138 kb on - strand, within ECD_03361at 3521.167 kb on - strand, within ECD_03361at 3521.280 kb on + strand, within ECD_03361at 3521.280 kb on + strand, within ECD_03361at 3521.280 kb on + strand, within ECD_03361at 3521.280 kb on + strand, within ECD_03361at 3521.280 kb on + strand, within ECD_03361at 3521.281 kb on - strand, within ECD_03361at 3521.281 kb on - strand, within ECD_03361at 3521.281 kb on - strand, within ECD_03361at 3521.321 kb on - strand, within ECD_03361at 3521.321 kb on - strand, within ECD_03361at 3521.321 kb on - strand, within ECD_03361at 3521.324 kb on - strand, within ECD_03361at 3521.407 kb on + strand, within ECD_03361at 3521.574 kb on + strandat 3521.589 kb on - strandat 3521.610 kb on + strandat 3521.641 kb on + strandat 3521.651 kb on + strandat 3521.651 kb on + strandat 3521.652 kb on - strandat 3521.654 kb on + strandat 3521.654 kb on + strandat 3521.654 kb on + strandat 3521.654 kb on + strandat 3521.654 kb on + strandat 3521.655 kb on - strandat 3521.742 kb on - strandat 3521.745 kb on + strandat 3521.770 kb on + strandat 3521.771 kb on - strandat 3521.805 kb on - strandat 3521.829 kb on + strandat 3521.829 kb on + strandat 3521.829 kb on + strandat 3521.829 kb on + strandat 3521.830 kb on - strandat 3521.830 kb on - strandat 3521.830 kb on - strandat 3521.954 kb on - strand, within ECD_03362at 3521.990 kb on + strand, within ECD_03362at 3522.006 kb on - strand, within ECD_03362at 3522.016 kb on + strand, within ECD_03362at 3522.027 kb on - strand, within ECD_03362at 3522.069 kb on + strand, within ECD_03362at 3522.069 kb on + strand, within ECD_03362at 3522.069 kb on + strand, within ECD_03362at 3522.069 kb on + strand, within ECD_03362at 3522.073 kb on + strand, within ECD_03362at 3522.073 kb on + strand, within ECD_03362at 3522.073 kb on + strand, within ECD_03362at 3522.073 kb on + strand, within ECD_03362at 3522.073 kb on + strand, within ECD_03362at 3522.073 kb on + strand, within ECD_03362at 3522.074 kb on - strand, within ECD_03362at 3522.074 kb on - strand, within ECD_03362at 3522.074 kb on - strand, within ECD_03362at 3522.074 kb on - strand, within ECD_03362at 3522.084 kb on - strand, within ECD_03362at 3522.119 kb on + strand, within ECD_03362at 3522.119 kb on + strand, within ECD_03362at 3522.124 kb on + strand, within ECD_03362at 3522.124 kb on + strand, within ECD_03362at 3522.125 kb on - strand, within ECD_03362at 3522.125 kb on - strand, within ECD_03362at 3522.155 kb on + strand, within ECD_03362at 3522.155 kb on + strand, within ECD_03362at 3522.155 kb on + strand, within ECD_03362at 3522.155 kb on + strand, within ECD_03362at 3522.156 kb on - strand, within ECD_03362at 3522.183 kb on - strand, within ECD_03362at 3522.186 kb on + strand, within ECD_03362at 3522.187 kb on - strand, within ECD_03362at 3522.188 kb on + strand, within ECD_03362at 3522.209 kb on + strand, within ECD_03362at 3522.209 kb on + strand, within ECD_03362at 3522.221 kb on + strand, within ECD_03362at 3522.289 kb on + strand, within ECD_03362at 3522.423 kb on + strand, within ECD_03362at 3522.441 kb on + strand, within ECD_03362

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,519,921 + ECD_03360 0.70 +0.3
3,520,014 + ECD_03360 0.87 -1.0
3,520,089 + -0.3
3,520,089 + +0.1
3,520,090 - -0.2
3,520,090 - -0.5
3,520,090 - -0.3
3,520,182 + +0.4
3,520,193 + +2.4
3,520,193 + +0.2
3,520,194 - -0.1
3,520,194 - +1.1
3,520,194 - +0.5
3,520,194 - -0.2
3,520,194 - -2.1
3,520,199 + +0.3
3,520,209 + +0.4
3,520,315 - -0.5
3,520,359 + -0.5
3,520,359 + +0.3
3,520,359 + +0.7
3,520,360 - +0.1
3,520,415 + +0.6
3,520,593 + ECD_03361 0.15 +0.6
3,520,594 - ECD_03361 0.15 +0.3
3,520,609 + ECD_03361 0.16 +0.2
3,520,610 - ECD_03361 0.16 -0.3
3,520,610 - ECD_03361 0.16 +0.8
3,520,629 - ECD_03361 0.18 +0.4
3,520,631 + ECD_03361 0.18 +0.8
3,520,631 + ECD_03361 0.18 -0.7
3,520,708 + ECD_03361 0.25 -0.2
3,520,815 + ECD_03361 0.34 +0.4
3,520,815 + ECD_03361 0.34 +0.5
3,520,815 + ECD_03361 0.34 +1.2
3,520,816 - ECD_03361 0.34 +1.2
3,520,834 - ECD_03361 0.36 -0.6
3,520,947 - ECD_03361 0.46 +1.3
3,520,997 + ECD_03361 0.50 +0.2
3,521,023 + ECD_03361 0.52 +0.0
3,521,024 - ECD_03361 0.52 -0.3
3,521,024 - ECD_03361 0.52 -0.6
3,521,043 + ECD_03361 0.54 -0.1
3,521,138 - ECD_03361 0.62 -0.7
3,521,167 - ECD_03361 0.65 +0.1
3,521,280 + ECD_03361 0.74 -0.2
3,521,280 + ECD_03361 0.74 -0.0
3,521,280 + ECD_03361 0.74 -0.4
3,521,280 + ECD_03361 0.74 -0.2
3,521,280 + ECD_03361 0.74 +1.0
3,521,281 - ECD_03361 0.74 +1.4
3,521,281 - ECD_03361 0.74 +0.1
3,521,281 - ECD_03361 0.74 +0.2
3,521,321 - ECD_03361 0.78 +1.1
3,521,321 - ECD_03361 0.78 -0.1
3,521,321 - ECD_03361 0.78 -0.0
3,521,324 - ECD_03361 0.78 -0.6
3,521,407 + ECD_03361 0.85 -0.6
3,521,574 + -0.8
3,521,589 - -1.3
3,521,610 + -0.0
3,521,641 + +0.1
3,521,651 + -1.1
3,521,651 + +0.3
3,521,652 - -0.2
3,521,654 + +0.7
3,521,654 + +0.1
3,521,654 + +0.3
3,521,654 + +0.0
3,521,654 + -0.8
3,521,655 - +1.1
3,521,742 - -0.1
3,521,745 + -0.2
3,521,770 + +0.8
3,521,771 - -2.0
3,521,805 - -0.7
3,521,829 + +0.1
3,521,829 + -0.4
3,521,829 + +0.8
3,521,829 + -0.0
3,521,830 - -1.1
3,521,830 - +0.4
3,521,830 - +0.3
3,521,954 - ECD_03362 0.11 -2.9
3,521,990 + ECD_03362 0.12 +0.4
3,522,006 - ECD_03362 0.13 -0.0
3,522,016 + ECD_03362 0.13 +0.7
3,522,027 - ECD_03362 0.14 +2.0
3,522,069 + ECD_03362 0.15 +0.6
3,522,069 + ECD_03362 0.15 -0.3
3,522,069 + ECD_03362 0.15 -0.7
3,522,069 + ECD_03362 0.15 -0.4
3,522,073 + ECD_03362 0.15 -0.1
3,522,073 + ECD_03362 0.15 +0.1
3,522,073 + ECD_03362 0.15 -0.1
3,522,073 + ECD_03362 0.15 +1.0
3,522,073 + ECD_03362 0.15 +0.3
3,522,073 + ECD_03362 0.15 +0.5
3,522,074 - ECD_03362 0.15 +0.3
3,522,074 - ECD_03362 0.15 +0.7
3,522,074 - ECD_03362 0.15 +0.1
3,522,074 - ECD_03362 0.15 +1.1
3,522,084 - ECD_03362 0.16 -0.0
3,522,119 + ECD_03362 0.17 +0.7
3,522,119 + ECD_03362 0.17 +1.6
3,522,124 + ECD_03362 0.17 -0.3
3,522,124 + ECD_03362 0.17 -1.2
3,522,125 - ECD_03362 0.17 +0.3
3,522,125 - ECD_03362 0.17 +0.6
3,522,155 + ECD_03362 0.18 -0.4
3,522,155 + ECD_03362 0.18 -0.2
3,522,155 + ECD_03362 0.18 +0.9
3,522,155 + ECD_03362 0.18 -0.8
3,522,156 - ECD_03362 0.18 -0.1
3,522,183 - ECD_03362 0.19 +1.0
3,522,186 + ECD_03362 0.19 +0.2
3,522,187 - ECD_03362 0.19 +0.1
3,522,188 + ECD_03362 0.19 +0.5
3,522,209 + ECD_03362 0.20 -0.3
3,522,209 + ECD_03362 0.20 -0.2
3,522,221 + ECD_03362 0.20 +0.3
3,522,289 + ECD_03362 0.22 +0.9
3,522,423 + ECD_03362 0.26 +0.0
3,522,441 + ECD_03362 0.27 +0.5

Or see this region's nucleotide sequence