Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03284 and ECD_03285 are separated by 272 nucleotides ECD_03285 and ECD_03286 are separated by 191 nucleotides ECD_03286 and ECD_03287 are separated by 56 nucleotides
ECD_03284: ECD_03284 - 1,4-alpha-glucan branching enzyme, at 3,434,466 to 3,436,652
_03284
ECD_03285: ECD_03285 - aspartate-semialdehyde dehydrogenase, NAD(P)-binding, at 3,436,925 to 3,438,028
_03285
ECD_03286: ECD_03286 - UPF0056 family inner membrane protein, at 3,438,220 to 3,438,813
_03286
ECD_03287: ECD_03287 - gluconate transporter, low affinity GNT 1 system, at 3,438,870 to 3,440,210
_03287
Position (kb)
3436
3437
3438
3439 Strain fitness (log2 ratio)
-2
-1
0
1 at 3435.969 kb on + strand, within ECD_03284 at 3435.970 kb on - strand, within ECD_03284 at 3435.996 kb on - strand, within ECD_03284 at 3436.085 kb on - strand, within ECD_03284 at 3436.085 kb on - strand, within ECD_03284 at 3436.089 kb on - strand, within ECD_03284 at 3436.089 kb on - strand, within ECD_03284 at 3436.104 kb on - strand, within ECD_03284 at 3436.260 kb on - strand, within ECD_03284 at 3436.262 kb on + strand, within ECD_03284 at 3436.262 kb on + strand, within ECD_03284 at 3436.262 kb on + strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.263 kb on - strand, within ECD_03284 at 3436.305 kb on - strand, within ECD_03284 at 3436.305 kb on - strand, within ECD_03284 at 3436.318 kb on - strand, within ECD_03284 at 3436.318 kb on - strand, within ECD_03284 at 3436.568 kb on + strand at 3436.569 kb on - strand at 3436.669 kb on + strand at 3436.778 kb on - strand at 3436.789 kb on + strand at 3436.790 kb on - strand at 3436.790 kb on - strand at 3436.797 kb on + strand at 3436.798 kb on - strand at 3436.798 kb on - strand at 3436.866 kb on + strand at 3436.866 kb on + strand at 3436.867 kb on - strand at 3436.874 kb on + strand at 3436.874 kb on + strand at 3436.875 kb on - strand at 3436.875 kb on - strand at 3436.877 kb on + strand at 3436.885 kb on - strand at 3436.913 kb on - strand at 3436.919 kb on + strand at 3436.926 kb on + strand at 3436.926 kb on + strand at 3438.059 kb on + strand at 3438.060 kb on - strand at 3438.060 kb on - strand at 3438.060 kb on - strand at 3438.062 kb on - strand at 3438.062 kb on - strand at 3438.062 kb on - strand at 3438.164 kb on + strand at 3438.177 kb on + strand at 3438.178 kb on - strand at 3438.202 kb on + strand at 3438.203 kb on - strand at 3438.220 kb on - strand at 3438.220 kb on - strand at 3438.248 kb on + strand at 3438.281 kb on + strand, within ECD_03286 at 3438.285 kb on + strand, within ECD_03286 at 3438.285 kb on + strand, within ECD_03286 at 3438.286 kb on - strand, within ECD_03286 at 3438.309 kb on + strand, within ECD_03286 at 3438.310 kb on - strand, within ECD_03286 at 3438.310 kb on - strand, within ECD_03286 at 3438.354 kb on + strand, within ECD_03286 at 3438.420 kb on - strand, within ECD_03286 at 3438.420 kb on - strand, within ECD_03286 at 3438.504 kb on + strand, within ECD_03286 at 3438.576 kb on + strand, within ECD_03286 at 3438.577 kb on - strand, within ECD_03286 at 3438.681 kb on - strand, within ECD_03286 at 3438.698 kb on + strand, within ECD_03286 at 3438.871 kb on + strand at 3438.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,435,969 + ECD_03284 0.69 -2.3 3,435,970 - ECD_03284 0.69 +0.5 3,435,996 - ECD_03284 0.70 -1.6 3,436,085 - ECD_03284 0.74 -0.2 3,436,085 - ECD_03284 0.74 +0.7 3,436,089 - ECD_03284 0.74 -0.3 3,436,089 - ECD_03284 0.74 +0.4 3,436,104 - ECD_03284 0.75 -1.7 3,436,260 - ECD_03284 0.82 +0.2 3,436,262 + ECD_03284 0.82 +0.5 3,436,262 + ECD_03284 0.82 +0.4 3,436,262 + ECD_03284 0.82 -0.2 3,436,263 - ECD_03284 0.82 +0.0 3,436,263 - ECD_03284 0.82 -1.5 3,436,263 - ECD_03284 0.82 -0.6 3,436,263 - ECD_03284 0.82 +0.3 3,436,263 - ECD_03284 0.82 +0.3 3,436,263 - ECD_03284 0.82 -0.2 3,436,263 - ECD_03284 0.82 +0.3 3,436,263 - ECD_03284 0.82 -0.4 3,436,305 - ECD_03284 0.84 -0.4 3,436,305 - ECD_03284 0.84 -0.5 3,436,318 - ECD_03284 0.85 -0.9 3,436,318 - ECD_03284 0.85 -1.9 3,436,568 + +0.1 3,436,569 - +0.1 3,436,669 + -0.8 3,436,778 - +0.4 3,436,789 + +0.9 3,436,790 - -0.0 3,436,790 - -0.0 3,436,797 + -0.2 3,436,798 - -0.9 3,436,798 - -0.5 3,436,866 + -0.5 3,436,866 + +0.2 3,436,867 - +0.3 3,436,874 + -0.3 3,436,874 + -0.5 3,436,875 - -0.6 3,436,875 - +0.7 3,436,877 + -0.9 3,436,885 - -0.3 3,436,913 - +0.7 3,436,919 + +0.1 3,436,926 + +0.0 3,436,926 + -1.7 3,438,059 + +0.4 3,438,060 - -0.4 3,438,060 - -0.0 3,438,060 - -0.2 3,438,062 - -0.4 3,438,062 - -0.2 3,438,062 - -1.2 3,438,164 + +0.1 3,438,177 + +0.7 3,438,178 - +0.6 3,438,202 + -0.1 3,438,203 - -0.1 3,438,220 - -0.2 3,438,220 - +0.4 3,438,248 + -0.2 3,438,281 + ECD_03286 0.10 +0.7 3,438,285 + ECD_03286 0.11 +0.4 3,438,285 + ECD_03286 0.11 -0.9 3,438,286 - ECD_03286 0.11 -0.7 3,438,309 + ECD_03286 0.15 -0.8 3,438,310 - ECD_03286 0.15 -0.1 3,438,310 - ECD_03286 0.15 +1.0 3,438,354 + ECD_03286 0.23 +0.5 3,438,420 - ECD_03286 0.34 +0.5 3,438,420 - ECD_03286 0.34 -0.6 3,438,504 + ECD_03286 0.48 -0.1 3,438,576 + ECD_03286 0.60 +0.1 3,438,577 - ECD_03286 0.60 +0.1 3,438,681 - ECD_03286 0.78 -0.5 3,438,698 + ECD_03286 0.80 -0.4 3,438,871 + +0.2 3,438,871 + -0.1
Or see this region's nucleotide sequence