Strain Fitness in Escherichia coli BL21 around ECD_03197

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03194 and ECD_03195 are separated by 7 nucleotidesECD_03195 and ECD_03196 overlap by 1 nucleotidesECD_03196 and ECD_03197 overlap by 1 nucleotidesECD_03197 and ECD_03198 are separated by 166 nucleotides ECD_03194: ECD_03194 - mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein, at 3,334,279 to 3,334,566 _03194 ECD_03195: ECD_03195 - mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein, at 3,334,574 to 3,334,933 _03195 ECD_03196: ECD_03196 - sulfurtransferase for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis, at 3,334,933 to 3,335,319 _03196 ECD_03197: ECD_03197 - putative PAS domain-containing DNA-binding transcriptional regulator, at 3,335,319 to 3,336,041 _03197 ECD_03198: ECD_03198 - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase), at 3,336,208 to 3,337,020 _03198 Position (kb) 3335 3336 3337Strain fitness (log2 ratio) -3 -2 -1 0 1at 3335.366 kb on - strandat 3335.372 kb on - strandat 3335.372 kb on - strandat 3335.372 kb on - strandat 3335.372 kb on - strandat 3335.427 kb on - strand, within ECD_03197at 3335.427 kb on - strand, within ECD_03197at 3335.671 kb on - strand, within ECD_03197at 3335.671 kb on - strand, within ECD_03197at 3335.671 kb on - strand, within ECD_03197at 3335.716 kb on - strand, within ECD_03197at 3335.719 kb on - strand, within ECD_03197at 3335.739 kb on - strand, within ECD_03197at 3335.751 kb on - strand, within ECD_03197at 3335.790 kb on - strand, within ECD_03197at 3335.790 kb on - strand, within ECD_03197at 3335.790 kb on - strand, within ECD_03197at 3335.794 kb on - strand, within ECD_03197at 3335.808 kb on - strand, within ECD_03197at 3335.808 kb on - strand, within ECD_03197at 3335.808 kb on - strand, within ECD_03197at 3335.835 kb on - strand, within ECD_03197at 3335.835 kb on - strand, within ECD_03197at 3335.835 kb on - strand, within ECD_03197at 3335.835 kb on - strand, within ECD_03197at 3336.152 kb on + strandat 3336.152 kb on + strandat 3336.202 kb on + strandat 3336.292 kb on + strand, within ECD_03198at 3336.367 kb on - strand, within ECD_03198at 3336.427 kb on - strand, within ECD_03198at 3336.467 kb on + strand, within ECD_03198at 3336.468 kb on - strand, within ECD_03198at 3336.468 kb on - strand, within ECD_03198at 3336.487 kb on - strand, within ECD_03198at 3336.509 kb on + strand, within ECD_03198at 3336.510 kb on - strand, within ECD_03198at 3336.510 kb on - strand, within ECD_03198at 3336.510 kb on - strand, within ECD_03198at 3336.517 kb on + strand, within ECD_03198at 3336.518 kb on - strand, within ECD_03198at 3336.563 kb on - strand, within ECD_03198at 3336.563 kb on - strand, within ECD_03198at 3336.566 kb on - strand, within ECD_03198at 3336.630 kb on - strand, within ECD_03198at 3336.846 kb on - strand, within ECD_03198at 3336.846 kb on - strand, within ECD_03198at 3336.846 kb on - strand, within ECD_03198at 3336.872 kb on + strand, within ECD_03198at 3336.873 kb on - strand, within ECD_03198at 3336.924 kb on + strand, within ECD_03198at 3337.005 kb on + strandat 3337.006 kb on - strandat 3337.024 kb on + strandat 3337.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,335,366 - -3.1
3,335,372 - +0.1
3,335,372 - -0.0
3,335,372 - +0.3
3,335,372 - +0.4
3,335,427 - ECD_03197 0.15 +0.8
3,335,427 - ECD_03197 0.15 +0.9
3,335,671 - ECD_03197 0.49 +1.7
3,335,671 - ECD_03197 0.49 -0.1
3,335,671 - ECD_03197 0.49 +0.7
3,335,716 - ECD_03197 0.55 -1.9
3,335,719 - ECD_03197 0.55 -0.7
3,335,739 - ECD_03197 0.58 -1.0
3,335,751 - ECD_03197 0.60 -0.2
3,335,790 - ECD_03197 0.65 +0.6
3,335,790 - ECD_03197 0.65 +0.3
3,335,790 - ECD_03197 0.65 +1.6
3,335,794 - ECD_03197 0.66 -0.2
3,335,808 - ECD_03197 0.68 +0.5
3,335,808 - ECD_03197 0.68 -1.3
3,335,808 - ECD_03197 0.68 +0.7
3,335,835 - ECD_03197 0.71 +1.5
3,335,835 - ECD_03197 0.71 -0.9
3,335,835 - ECD_03197 0.71 +0.2
3,335,835 - ECD_03197 0.71 -0.5
3,336,152 + -0.2
3,336,152 + -0.0
3,336,202 + -0.3
3,336,292 + ECD_03198 0.10 -0.7
3,336,367 - ECD_03198 0.20 +0.3
3,336,427 - ECD_03198 0.27 -0.7
3,336,467 + ECD_03198 0.32 -1.2
3,336,468 - ECD_03198 0.32 -0.4
3,336,468 - ECD_03198 0.32 -0.2
3,336,487 - ECD_03198 0.34 -1.1
3,336,509 + ECD_03198 0.37 +0.1
3,336,510 - ECD_03198 0.37 +0.8
3,336,510 - ECD_03198 0.37 -0.1
3,336,510 - ECD_03198 0.37 +0.2
3,336,517 + ECD_03198 0.38 +0.6
3,336,518 - ECD_03198 0.38 -1.2
3,336,563 - ECD_03198 0.44 -0.6
3,336,563 - ECD_03198 0.44 -0.5
3,336,566 - ECD_03198 0.44 +0.4
3,336,630 - ECD_03198 0.52 +0.4
3,336,846 - ECD_03198 0.78 +0.2
3,336,846 - ECD_03198 0.78 -0.2
3,336,846 - ECD_03198 0.78 -0.3
3,336,872 + ECD_03198 0.82 -0.4
3,336,873 - ECD_03198 0.82 -0.2
3,336,924 + ECD_03198 0.88 -0.2
3,337,005 + -0.7
3,337,006 - +1.4
3,337,024 + +0.4
3,337,025 - +0.8

Or see this region's nucleotide sequence