Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03043 and ECD_03044 are separated by 99 nucleotides ECD_03044 and ECD_03045 are separated by 125 nucleotides ECD_03045 and ECD_03046 are separated by 155 nucleotides
ECD_03043: ECD_03043 - protease, ATP-dependent zinc-metallo, at 3,193,500 to 3,195,434
_03043
ECD_03044: ECD_03044 - 23S rRNA U2552 2'-O-ribose methyltransferase, SAM-dependent, at 3,195,534 to 3,196,163
_03044
ECD_03045: ECD_03045 - RNA binding protein, at 3,196,289 to 3,196,582
_03045
ECD_03046: ECD_03046 - transcript cleavage factor, at 3,196,738 to 3,197,214
_03046
Position (kb)
3195
3196
3197 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3196.231 kb on - strand at 3196.231 kb on - strand at 3196.285 kb on + strand at 3196.300 kb on + strand at 3196.303 kb on + strand at 3196.303 kb on + strand at 3196.304 kb on - strand at 3196.304 kb on - strand at 3196.367 kb on - strand, within ECD_03045 at 3196.411 kb on - strand, within ECD_03045 at 3196.462 kb on + strand, within ECD_03045 at 3196.483 kb on + strand, within ECD_03045 at 3196.507 kb on + strand, within ECD_03045 at 3196.507 kb on + strand, within ECD_03045 at 3196.507 kb on + strand, within ECD_03045 at 3196.507 kb on + strand, within ECD_03045 at 3196.508 kb on - strand, within ECD_03045 at 3196.508 kb on - strand, within ECD_03045 at 3196.512 kb on + strand, within ECD_03045 at 3196.513 kb on - strand, within ECD_03045 at 3196.513 kb on - strand, within ECD_03045 at 3196.552 kb on + strand, within ECD_03045 at 3196.552 kb on + strand, within ECD_03045 at 3196.553 kb on - strand at 3196.614 kb on + strand at 3196.740 kb on - strand at 3196.755 kb on + strand at 3196.759 kb on + strand at 3196.759 kb on + strand at 3196.839 kb on + strand, within ECD_03046 at 3196.870 kb on - strand, within ECD_03046 at 3196.901 kb on + strand, within ECD_03046 at 3196.901 kb on + strand, within ECD_03046 at 3196.902 kb on - strand, within ECD_03046 at 3196.944 kb on + strand, within ECD_03046 at 3196.944 kb on + strand, within ECD_03046 at 3196.957 kb on - strand, within ECD_03046 at 3197.029 kb on - strand, within ECD_03046 at 3197.032 kb on - strand, within ECD_03046
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,196,231 - +0.4 3,196,231 - +0.3 3,196,285 + -1.0 3,196,300 + +0.6 3,196,303 + -0.7 3,196,303 + -0.4 3,196,304 - +0.7 3,196,304 - -0.6 3,196,367 - ECD_03045 0.27 -1.9 3,196,411 - ECD_03045 0.41 -0.0 3,196,462 + ECD_03045 0.59 -0.2 3,196,483 + ECD_03045 0.66 -1.2 3,196,507 + ECD_03045 0.74 -0.3 3,196,507 + ECD_03045 0.74 +0.3 3,196,507 + ECD_03045 0.74 +1.1 3,196,507 + ECD_03045 0.74 -1.0 3,196,508 - ECD_03045 0.74 +0.2 3,196,508 - ECD_03045 0.74 +0.2 3,196,512 + ECD_03045 0.76 +0.6 3,196,513 - ECD_03045 0.76 +0.9 3,196,513 - ECD_03045 0.76 +2.4 3,196,552 + ECD_03045 0.89 -0.3 3,196,552 + ECD_03045 0.89 -1.3 3,196,553 - -0.2 3,196,614 + -0.1 3,196,740 - -0.5 3,196,755 + -0.9 3,196,759 + -0.5 3,196,759 + -1.4 3,196,839 + ECD_03046 0.21 -1.0 3,196,870 - ECD_03046 0.28 -0.8 3,196,901 + ECD_03046 0.34 +0.1 3,196,901 + ECD_03046 0.34 +0.9 3,196,902 - ECD_03046 0.34 +0.0 3,196,944 + ECD_03046 0.43 -0.1 3,196,944 + ECD_03046 0.43 -0.4 3,196,957 - ECD_03046 0.46 -0.0 3,197,029 - ECD_03046 0.61 -1.9 3,197,032 - ECD_03046 0.62 +0.6
Or see this region's nucleotide sequence