Strain Fitness in Escherichia coli BL21 around ECD_03044

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03043 and ECD_03044 are separated by 99 nucleotidesECD_03044 and ECD_03045 are separated by 125 nucleotidesECD_03045 and ECD_03046 are separated by 155 nucleotides ECD_03043: ECD_03043 - protease, ATP-dependent zinc-metallo, at 3,193,500 to 3,195,434 _03043 ECD_03044: ECD_03044 - 23S rRNA U2552 2'-O-ribose methyltransferase, SAM-dependent, at 3,195,534 to 3,196,163 _03044 ECD_03045: ECD_03045 - RNA binding protein, at 3,196,289 to 3,196,582 _03045 ECD_03046: ECD_03046 - transcript cleavage factor, at 3,196,738 to 3,197,214 _03046 Position (kb) 3195 3196 3197Strain fitness (log2 ratio) -2 -1 0 1 2at 3196.231 kb on - strandat 3196.231 kb on - strandat 3196.285 kb on + strandat 3196.300 kb on + strandat 3196.303 kb on + strandat 3196.303 kb on + strandat 3196.304 kb on - strandat 3196.304 kb on - strandat 3196.367 kb on - strand, within ECD_03045at 3196.411 kb on - strand, within ECD_03045at 3196.462 kb on + strand, within ECD_03045at 3196.483 kb on + strand, within ECD_03045at 3196.507 kb on + strand, within ECD_03045at 3196.507 kb on + strand, within ECD_03045at 3196.507 kb on + strand, within ECD_03045at 3196.507 kb on + strand, within ECD_03045at 3196.508 kb on - strand, within ECD_03045at 3196.508 kb on - strand, within ECD_03045at 3196.512 kb on + strand, within ECD_03045at 3196.513 kb on - strand, within ECD_03045at 3196.513 kb on - strand, within ECD_03045at 3196.552 kb on + strand, within ECD_03045at 3196.552 kb on + strand, within ECD_03045at 3196.553 kb on - strandat 3196.614 kb on + strandat 3196.740 kb on - strandat 3196.755 kb on + strandat 3196.759 kb on + strandat 3196.759 kb on + strandat 3196.839 kb on + strand, within ECD_03046at 3196.870 kb on - strand, within ECD_03046at 3196.901 kb on + strand, within ECD_03046at 3196.901 kb on + strand, within ECD_03046at 3196.902 kb on - strand, within ECD_03046at 3196.944 kb on + strand, within ECD_03046at 3196.944 kb on + strand, within ECD_03046at 3196.957 kb on - strand, within ECD_03046at 3197.029 kb on - strand, within ECD_03046at 3197.032 kb on - strand, within ECD_03046

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,196,231 - +0.4
3,196,231 - +0.3
3,196,285 + -1.0
3,196,300 + +0.6
3,196,303 + -0.7
3,196,303 + -0.4
3,196,304 - +0.7
3,196,304 - -0.6
3,196,367 - ECD_03045 0.27 -1.9
3,196,411 - ECD_03045 0.41 -0.0
3,196,462 + ECD_03045 0.59 -0.2
3,196,483 + ECD_03045 0.66 -1.2
3,196,507 + ECD_03045 0.74 -0.3
3,196,507 + ECD_03045 0.74 +0.3
3,196,507 + ECD_03045 0.74 +1.1
3,196,507 + ECD_03045 0.74 -1.0
3,196,508 - ECD_03045 0.74 +0.2
3,196,508 - ECD_03045 0.74 +0.2
3,196,512 + ECD_03045 0.76 +0.6
3,196,513 - ECD_03045 0.76 +0.9
3,196,513 - ECD_03045 0.76 +2.4
3,196,552 + ECD_03045 0.89 -0.3
3,196,552 + ECD_03045 0.89 -1.3
3,196,553 - -0.2
3,196,614 + -0.1
3,196,740 - -0.5
3,196,755 + -0.9
3,196,759 + -0.5
3,196,759 + -1.4
3,196,839 + ECD_03046 0.21 -1.0
3,196,870 - ECD_03046 0.28 -0.8
3,196,901 + ECD_03046 0.34 +0.1
3,196,901 + ECD_03046 0.34 +0.9
3,196,902 - ECD_03046 0.34 +0.0
3,196,944 + ECD_03046 0.43 -0.1
3,196,944 + ECD_03046 0.43 -0.4
3,196,957 - ECD_03046 0.46 -0.0
3,197,029 - ECD_03046 0.61 -1.9
3,197,032 - ECD_03046 0.62 +0.6

Or see this region's nucleotide sequence