Strain Fitness in Escherichia coli BL21 around ECD_02877

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02876 and ECD_02877 are separated by 39 nucleotidesECD_02877 and ECD_02878 are separated by 190 nucleotides ECD_02876: ECD_02876 - L-glyceraldehyde 3-phosphate reductase, at 3,015,334 to 3,016,374 _02876 ECD_02877: ECD_02877 - UPF0114 family putative inner membrane protein, at 3,016,414 to 3,016,908 _02877 ECD_02878: ECD_02878 - putative oxidoreductase, at 3,017,099 to 3,017,983 _02878 Position (kb) 3016 3017Strain fitness (log2 ratio) -1 0 1 2at 3015.483 kb on + strand, within ECD_02876at 3015.595 kb on + strand, within ECD_02876at 3015.612 kb on + strand, within ECD_02876at 3015.613 kb on - strand, within ECD_02876at 3015.618 kb on + strand, within ECD_02876at 3015.652 kb on + strand, within ECD_02876at 3015.653 kb on - strand, within ECD_02876at 3015.672 kb on + strand, within ECD_02876at 3015.672 kb on + strand, within ECD_02876at 3015.672 kb on + strand, within ECD_02876at 3015.673 kb on - strand, within ECD_02876at 3015.676 kb on + strand, within ECD_02876at 3015.677 kb on - strand, within ECD_02876at 3015.724 kb on + strand, within ECD_02876at 3015.724 kb on + strand, within ECD_02876at 3015.724 kb on + strand, within ECD_02876at 3015.725 kb on - strand, within ECD_02876at 3015.725 kb on - strand, within ECD_02876at 3015.725 kb on - strand, within ECD_02876at 3015.725 kb on - strand, within ECD_02876at 3015.823 kb on + strand, within ECD_02876at 3015.842 kb on - strand, within ECD_02876at 3016.140 kb on - strand, within ECD_02876at 3016.256 kb on + strand, within ECD_02876at 3016.256 kb on + strand, within ECD_02876at 3016.293 kb on + strandat 3016.293 kb on + strandat 3016.294 kb on - strandat 3016.381 kb on - strandat 3016.423 kb on - strandat 3016.445 kb on + strandat 3016.445 kb on + strandat 3016.494 kb on - strand, within ECD_02877at 3016.494 kb on - strand, within ECD_02877at 3016.494 kb on - strand, within ECD_02877at 3016.546 kb on + strand, within ECD_02877at 3016.677 kb on - strand, within ECD_02877at 3016.776 kb on + strand, within ECD_02877at 3016.777 kb on - strand, within ECD_02877at 3016.795 kb on - strand, within ECD_02877at 3016.795 kb on - strand, within ECD_02877at 3016.829 kb on - strand, within ECD_02877at 3016.851 kb on - strand, within ECD_02877at 3016.851 kb on - strand, within ECD_02877at 3016.851 kb on - strand, within ECD_02877at 3016.880 kb on + strandat 3016.880 kb on + strandat 3016.880 kb on + strandat 3016.880 kb on + strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.908 kb on + strandat 3016.908 kb on + strandat 3016.909 kb on - strandat 3016.909 kb on - strandat 3016.909 kb on - strandat 3016.909 kb on - strandat 3016.909 kb on - strandat 3016.942 kb on + strandat 3016.942 kb on + strandat 3016.942 kb on + strandat 3016.942 kb on + strandat 3016.942 kb on + strandat 3016.943 kb on - strandat 3016.943 kb on - strandat 3016.943 kb on - strandat 3016.984 kb on + strandat 3016.984 kb on + strandat 3016.984 kb on + strandat 3016.985 kb on - strandat 3016.985 kb on - strandat 3016.985 kb on - strandat 3016.985 kb on - strandat 3016.985 kb on - strandat 3016.987 kb on - strandat 3016.987 kb on - strandat 3016.987 kb on - strandat 3016.987 kb on - strandat 3016.991 kb on + strandat 3017.006 kb on + strandat 3017.019 kb on + strandat 3017.040 kb on + strandat 3017.041 kb on - strandat 3017.061 kb on + strandat 3017.132 kb on + strandat 3017.133 kb on - strandat 3017.133 kb on - strandat 3017.219 kb on + strand, within ECD_02878at 3017.219 kb on + strand, within ECD_02878at 3017.219 kb on + strand, within ECD_02878at 3017.220 kb on - strand, within ECD_02878at 3017.220 kb on - strand, within ECD_02878at 3017.248 kb on + strand, within ECD_02878at 3017.248 kb on + strand, within ECD_02878at 3017.336 kb on + strand, within ECD_02878at 3017.337 kb on - strand, within ECD_02878at 3017.491 kb on + strand, within ECD_02878at 3017.638 kb on + strand, within ECD_02878at 3017.638 kb on + strand, within ECD_02878at 3017.638 kb on + strand, within ECD_02878at 3017.639 kb on - strand, within ECD_02878at 3017.639 kb on - strand, within ECD_02878at 3017.639 kb on - strand, within ECD_02878at 3017.639 kb on - strand, within ECD_02878at 3017.666 kb on + strand, within ECD_02878at 3017.685 kb on + strand, within ECD_02878at 3017.693 kb on + strand, within ECD_02878at 3017.694 kb on - strand, within ECD_02878at 3017.761 kb on + strand, within ECD_02878at 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.902 kb on - strandat 3017.902 kb on - strandat 3017.902 kb on - strandat 3017.902 kb on - strandat 3017.903 kb on + strandat 3017.903 kb on + strandat 3017.903 kb on + strandat 3017.904 kb on - strandat 3017.904 kb on - strandat 3017.904 kb on - strandat 3017.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,015,483 + ECD_02876 0.14 -0.5
3,015,595 + ECD_02876 0.25 +0.1
3,015,612 + ECD_02876 0.27 +0.3
3,015,613 - ECD_02876 0.27 +0.1
3,015,618 + ECD_02876 0.27 -1.1
3,015,652 + ECD_02876 0.31 -1.3
3,015,653 - ECD_02876 0.31 -0.5
3,015,672 + ECD_02876 0.32 -0.9
3,015,672 + ECD_02876 0.32 +0.3
3,015,672 + ECD_02876 0.32 +0.8
3,015,673 - ECD_02876 0.33 +1.1
3,015,676 + ECD_02876 0.33 +0.9
3,015,677 - ECD_02876 0.33 -0.3
3,015,724 + ECD_02876 0.37 -0.5
3,015,724 + ECD_02876 0.37 -0.6
3,015,724 + ECD_02876 0.37 -0.7
3,015,725 - ECD_02876 0.38 +0.5
3,015,725 - ECD_02876 0.38 +0.3
3,015,725 - ECD_02876 0.38 -0.2
3,015,725 - ECD_02876 0.38 -0.4
3,015,823 + ECD_02876 0.47 +0.2
3,015,842 - ECD_02876 0.49 +0.5
3,016,140 - ECD_02876 0.77 +0.5
3,016,256 + ECD_02876 0.89 +0.3
3,016,256 + ECD_02876 0.89 -0.2
3,016,293 + +0.1
3,016,293 + -1.4
3,016,294 - +0.3
3,016,381 - -0.3
3,016,423 - -0.4
3,016,445 + +0.1
3,016,445 + -0.2
3,016,494 - ECD_02877 0.16 -0.5
3,016,494 - ECD_02877 0.16 +0.3
3,016,494 - ECD_02877 0.16 -0.5
3,016,546 + ECD_02877 0.27 -0.2
3,016,677 - ECD_02877 0.53 -0.2
3,016,776 + ECD_02877 0.73 -0.0
3,016,777 - ECD_02877 0.73 -0.7
3,016,795 - ECD_02877 0.77 -0.3
3,016,795 - ECD_02877 0.77 -0.2
3,016,829 - ECD_02877 0.84 -0.1
3,016,851 - ECD_02877 0.88 -0.9
3,016,851 - ECD_02877 0.88 +0.2
3,016,851 - ECD_02877 0.88 -0.6
3,016,880 + +0.5
3,016,880 + -0.1
3,016,880 + -0.1
3,016,880 + -0.1
3,016,881 - +0.2
3,016,881 - -0.2
3,016,881 - +0.3
3,016,881 - +0.1
3,016,881 - +0.8
3,016,881 - +0.3
3,016,881 - +0.0
3,016,881 - +0.3
3,016,881 - +0.9
3,016,881 - +2.6
3,016,881 - +0.3
3,016,881 - -0.7
3,016,908 + +0.3
3,016,908 + +0.5
3,016,909 - -1.3
3,016,909 - -0.4
3,016,909 - -0.6
3,016,909 - +0.7
3,016,909 - +1.3
3,016,942 + -0.2
3,016,942 + +0.8
3,016,942 + -0.2
3,016,942 + +0.3
3,016,942 + -0.2
3,016,943 - +0.0
3,016,943 - -0.0
3,016,943 - -0.4
3,016,984 + +0.9
3,016,984 + -1.3
3,016,984 + -0.4
3,016,985 - +0.4
3,016,985 - +0.4
3,016,985 - -0.3
3,016,985 - -0.1
3,016,985 - +1.1
3,016,987 - -0.8
3,016,987 - -0.6
3,016,987 - -0.4
3,016,987 - +1.0
3,016,991 + +0.2
3,017,006 + -0.1
3,017,019 + -0.9
3,017,040 + -0.1
3,017,041 - -1.7
3,017,061 + -0.9
3,017,132 + -0.9
3,017,133 - +0.3
3,017,133 - +0.8
3,017,219 + ECD_02878 0.14 +0.7
3,017,219 + ECD_02878 0.14 +0.2
3,017,219 + ECD_02878 0.14 -0.1
3,017,220 - ECD_02878 0.14 +0.4
3,017,220 - ECD_02878 0.14 -0.6
3,017,248 + ECD_02878 0.17 +0.4
3,017,248 + ECD_02878 0.17 +1.1
3,017,336 + ECD_02878 0.27 -1.4
3,017,337 - ECD_02878 0.27 -1.7
3,017,491 + ECD_02878 0.44 +2.3
3,017,638 + ECD_02878 0.61 -1.3
3,017,638 + ECD_02878 0.61 +0.4
3,017,638 + ECD_02878 0.61 +0.3
3,017,639 - ECD_02878 0.61 +0.0
3,017,639 - ECD_02878 0.61 -0.8
3,017,639 - ECD_02878 0.61 -0.2
3,017,639 - ECD_02878 0.61 -0.2
3,017,666 + ECD_02878 0.64 +0.7
3,017,685 + ECD_02878 0.66 -0.0
3,017,693 + ECD_02878 0.67 -0.4
3,017,694 - ECD_02878 0.67 -0.2
3,017,761 + ECD_02878 0.75 +0.6
3,017,901 + -0.2
3,017,901 + +1.2
3,017,901 + -0.2
3,017,901 + -0.4
3,017,901 + -0.3
3,017,901 + -0.8
3,017,901 + -0.3
3,017,901 + +0.4
3,017,901 + +0.5
3,017,901 + -0.6
3,017,902 - +0.4
3,017,902 - -0.2
3,017,902 - -0.0
3,017,902 - -0.2
3,017,903 + +0.1
3,017,903 + +0.1
3,017,903 + +0.1
3,017,904 - -0.4
3,017,904 - -0.9
3,017,904 - +0.1
3,017,904 - +0.3

Or see this region's nucleotide sequence