Strain Fitness in Escherichia coli BL21 around ECD_02779

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02777 and ECD_02778 are separated by 108 nucleotidesECD_02778 and ECD_02779 overlap by 1 nucleotidesECD_02779 and ECD_02780 are separated by 183 nucleotides ECD_02777: ECD_02777 - glutathione synthetase, at 2,922,736 to 2,923,686 _02777 ECD_02778: ECD_02778 - uncharacterized protein, at 2,923,795 to 2,924,358 _02778 ECD_02779: ECD_02779 - putative Holliday junction resolvase, at 2,924,358 to 2,924,774 _02779 ECD_02780: ECD_02780 - putative PilT family AAA+ ATPase, at 2,924,958 to 2,925,938 _02780 Position (kb) 2924 2925Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2923.396 kb on + strand, within ECD_02777at 2923.673 kb on + strandat 2923.748 kb on + strandat 2923.818 kb on + strandat 2923.867 kb on + strand, within ECD_02778at 2923.881 kb on + strand, within ECD_02778at 2923.881 kb on + strand, within ECD_02778at 2923.881 kb on + strand, within ECD_02778at 2923.884 kb on + strand, within ECD_02778at 2924.165 kb on + strand, within ECD_02778at 2924.259 kb on + strand, within ECD_02778at 2924.371 kb on + strandat 2924.772 kb on + strandat 2924.772 kb on + strandat 2924.773 kb on - strandat 2924.800 kb on + strandat 2924.804 kb on + strandat 2924.804 kb on + strandat 2924.804 kb on + strandat 2924.805 kb on - strandat 2924.805 kb on - strandat 2924.807 kb on + strandat 2924.873 kb on + strandat 2924.873 kb on + strandat 2924.874 kb on - strandat 2924.882 kb on + strandat 2924.911 kb on + strandat 2924.911 kb on + strandat 2924.911 kb on + strandat 2924.912 kb on - strandat 2924.923 kb on - strandat 2924.923 kb on - strandat 2924.931 kb on + strandat 2924.931 kb on + strandat 2924.990 kb on - strandat 2925.033 kb on - strandat 2925.260 kb on + strand, within ECD_02780at 2925.261 kb on - strand, within ECD_02780at 2925.264 kb on + strand, within ECD_02780at 2925.401 kb on + strand, within ECD_02780at 2925.402 kb on - strand, within ECD_02780at 2925.402 kb on - strand, within ECD_02780at 2925.402 kb on - strand, within ECD_02780at 2925.451 kb on + strand, within ECD_02780at 2925.458 kb on - strand, within ECD_02780at 2925.458 kb on - strand, within ECD_02780at 2925.511 kb on + strand, within ECD_02780at 2925.651 kb on + strand, within ECD_02780at 2925.762 kb on + strand, within ECD_02780

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
2,923,396 + ECD_02777 0.69 +1.0
2,923,673 + -0.0
2,923,748 + -0.1
2,923,818 + +0.9
2,923,867 + ECD_02778 0.13 -0.3
2,923,881 + ECD_02778 0.15 -0.1
2,923,881 + ECD_02778 0.15 -0.0
2,923,881 + ECD_02778 0.15 -1.6
2,923,884 + ECD_02778 0.16 -0.0
2,924,165 + ECD_02778 0.66 +0.2
2,924,259 + ECD_02778 0.82 +1.9
2,924,371 + -3.5
2,924,772 + -0.5
2,924,772 + -0.1
2,924,773 - -0.8
2,924,800 + -0.0
2,924,804 + +0.1
2,924,804 + +0.6
2,924,804 + -0.5
2,924,805 - -0.1
2,924,805 - -0.4
2,924,807 + +0.0
2,924,873 + -0.2
2,924,873 + -0.1
2,924,874 - +0.5
2,924,882 + +0.8
2,924,911 + +1.7
2,924,911 + -0.3
2,924,911 + +0.4
2,924,912 - +0.2
2,924,923 - -1.3
2,924,923 - -0.2
2,924,931 + +1.1
2,924,931 + -0.0
2,924,990 - -0.8
2,925,033 - +0.3
2,925,260 + ECD_02780 0.31 -2.2
2,925,261 - ECD_02780 0.31 -1.5
2,925,264 + ECD_02780 0.31 -0.1
2,925,401 + ECD_02780 0.45 -0.1
2,925,402 - ECD_02780 0.45 -0.6
2,925,402 - ECD_02780 0.45 +0.1
2,925,402 - ECD_02780 0.45 -0.1
2,925,451 + ECD_02780 0.50 -0.9
2,925,458 - ECD_02780 0.51 +0.2
2,925,458 - ECD_02780 0.51 -0.2
2,925,511 + ECD_02780 0.56 -0.7
2,925,651 + ECD_02780 0.71 +0.4
2,925,762 + ECD_02780 0.82 -2.3

Or see this region's nucleotide sequence