Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02777 and ECD_02778 are separated by 108 nucleotides ECD_02778 and ECD_02779 overlap by 1 nucleotides ECD_02779 and ECD_02780 are separated by 183 nucleotides
ECD_02777: ECD_02777 - glutathione synthetase, at 2,922,736 to 2,923,686
_02777
ECD_02778: ECD_02778 - uncharacterized protein, at 2,923,795 to 2,924,358
_02778
ECD_02779: ECD_02779 - putative Holliday junction resolvase, at 2,924,358 to 2,924,774
_02779
ECD_02780: ECD_02780 - putative PilT family AAA+ ATPase, at 2,924,958 to 2,925,938
_02780
Position (kb)
2924
2925 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2923.396 kb on + strand, within ECD_02777 at 2923.673 kb on + strand at 2923.748 kb on + strand at 2923.818 kb on + strand at 2923.867 kb on + strand, within ECD_02778 at 2923.881 kb on + strand, within ECD_02778 at 2923.881 kb on + strand, within ECD_02778 at 2923.881 kb on + strand, within ECD_02778 at 2923.884 kb on + strand, within ECD_02778 at 2924.165 kb on + strand, within ECD_02778 at 2924.259 kb on + strand, within ECD_02778 at 2924.371 kb on + strand at 2924.772 kb on + strand at 2924.772 kb on + strand at 2924.773 kb on - strand at 2924.800 kb on + strand at 2924.804 kb on + strand at 2924.804 kb on + strand at 2924.804 kb on + strand at 2924.805 kb on - strand at 2924.805 kb on - strand at 2924.807 kb on + strand at 2924.873 kb on + strand at 2924.873 kb on + strand at 2924.874 kb on - strand at 2924.882 kb on + strand at 2924.911 kb on + strand at 2924.911 kb on + strand at 2924.911 kb on + strand at 2924.912 kb on - strand at 2924.923 kb on - strand at 2924.923 kb on - strand at 2924.931 kb on + strand at 2924.931 kb on + strand at 2924.990 kb on - strand at 2925.033 kb on - strand at 2925.260 kb on + strand, within ECD_02780 at 2925.261 kb on - strand, within ECD_02780 at 2925.264 kb on + strand, within ECD_02780 at 2925.401 kb on + strand, within ECD_02780 at 2925.402 kb on - strand, within ECD_02780 at 2925.402 kb on - strand, within ECD_02780 at 2925.402 kb on - strand, within ECD_02780 at 2925.451 kb on + strand, within ECD_02780 at 2925.458 kb on - strand, within ECD_02780 at 2925.458 kb on - strand, within ECD_02780 at 2925.511 kb on + strand, within ECD_02780 at 2925.651 kb on + strand, within ECD_02780 at 2925.762 kb on + strand, within ECD_02780
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,923,396 + ECD_02777 0.69 +1.0 2,923,673 + -0.0 2,923,748 + -0.1 2,923,818 + +0.9 2,923,867 + ECD_02778 0.13 -0.3 2,923,881 + ECD_02778 0.15 -0.1 2,923,881 + ECD_02778 0.15 -0.0 2,923,881 + ECD_02778 0.15 -1.6 2,923,884 + ECD_02778 0.16 -0.0 2,924,165 + ECD_02778 0.66 +0.2 2,924,259 + ECD_02778 0.82 +1.9 2,924,371 + -3.5 2,924,772 + -0.5 2,924,772 + -0.1 2,924,773 - -0.8 2,924,800 + -0.0 2,924,804 + +0.1 2,924,804 + +0.6 2,924,804 + -0.5 2,924,805 - -0.1 2,924,805 - -0.4 2,924,807 + +0.0 2,924,873 + -0.2 2,924,873 + -0.1 2,924,874 - +0.5 2,924,882 + +0.8 2,924,911 + +1.7 2,924,911 + -0.3 2,924,911 + +0.4 2,924,912 - +0.2 2,924,923 - -1.3 2,924,923 - -0.2 2,924,931 + +1.1 2,924,931 + -0.0 2,924,990 - -0.8 2,925,033 - +0.3 2,925,260 + ECD_02780 0.31 -2.2 2,925,261 - ECD_02780 0.31 -1.5 2,925,264 + ECD_02780 0.31 -0.1 2,925,401 + ECD_02780 0.45 -0.1 2,925,402 - ECD_02780 0.45 -0.6 2,925,402 - ECD_02780 0.45 +0.1 2,925,402 - ECD_02780 0.45 -0.1 2,925,451 + ECD_02780 0.50 -0.9 2,925,458 - ECD_02780 0.51 +0.2 2,925,458 - ECD_02780 0.51 -0.2 2,925,511 + ECD_02780 0.56 -0.7 2,925,651 + ECD_02780 0.71 +0.4 2,925,762 + ECD_02780 0.82 -2.3
Or see this region's nucleotide sequence