Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02493 and ECD_02494 are separated by 15 nucleotides ECD_02494 and ECD_02495 are separated by 75 nucleotides ECD_02495 and ECD_02496 are separated by 41 nucleotides ECD_02496 and ECD_02497 are separated by 30 nucleotides
ECD_02493: ECD_02493 - putative membrane-anchored diguanylate cyclase, at 2,608,897 to 2,610,123
_02493
ECD_02494: ECD_02494 - OM lipoprotein putative positive effector of YfiN activity, at 2,610,139 to 2,610,621
_02494
ECD_02495: ECD_02495 - 50S ribosomal subunit protein L19, at 2,610,697 to 2,611,044
_02495
ECD_02496: ECD_02496 - tRNA m(1)G37 methyltransferase, SAM-dependent, at 2,611,086 to 2,611,853
_02496
ECD_02497: ECD_02497 - ribosome maturation factor, at 2,611,884 to 2,612,432
_02497
Position (kb)
2610
2611
2612 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2609.770 kb on + strand, within ECD_02493 at 2609.770 kb on + strand, within ECD_02493 at 2609.770 kb on + strand, within ECD_02493 at 2609.771 kb on - strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.859 kb on + strand, within ECD_02493 at 2609.860 kb on - strand, within ECD_02493 at 2609.860 kb on - strand, within ECD_02493 at 2609.860 kb on - strand, within ECD_02493 at 2609.866 kb on + strand, within ECD_02493 at 2609.902 kb on + strand, within ECD_02493 at 2609.909 kb on + strand, within ECD_02493 at 2609.910 kb on - strand, within ECD_02493 at 2610.078 kb on + strand at 2610.078 kb on + strand at 2610.078 kb on + strand at 2610.078 kb on + strand at 2610.079 kb on - strand at 2610.079 kb on - strand at 2610.079 kb on - strand at 2610.121 kb on + strand at 2610.122 kb on - strand at 2610.131 kb on - strand at 2610.133 kb on - strand at 2610.179 kb on + strand at 2610.179 kb on + strand at 2610.255 kb on + strand, within ECD_02494 at 2610.255 kb on + strand, within ECD_02494 at 2610.319 kb on + strand, within ECD_02494 at 2610.367 kb on - strand, within ECD_02494 at 2610.417 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.421 kb on + strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.422 kb on - strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.436 kb on + strand, within ECD_02494 at 2610.449 kb on + strand, within ECD_02494 at 2610.450 kb on - strand, within ECD_02494 at 2610.450 kb on - strand, within ECD_02494 at 2610.450 kb on - strand, within ECD_02494 at 2610.490 kb on - strand, within ECD_02494 at 2610.490 kb on - strand, within ECD_02494 at 2610.610 kb on - strand at 2610.610 kb on - strand at 2610.638 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,609,770 + ECD_02493 0.71 -0.3 2,609,770 + ECD_02493 0.71 -0.1 2,609,770 + ECD_02493 0.71 -0.3 2,609,771 - ECD_02493 0.71 -0.9 2,609,859 + ECD_02493 0.78 -0.3 2,609,859 + ECD_02493 0.78 +0.2 2,609,859 + ECD_02493 0.78 +0.1 2,609,859 + ECD_02493 0.78 +1.1 2,609,859 + ECD_02493 0.78 -0.4 2,609,860 - ECD_02493 0.78 -0.6 2,609,860 - ECD_02493 0.78 -0.2 2,609,860 - ECD_02493 0.78 +0.0 2,609,866 + ECD_02493 0.79 -2.6 2,609,902 + ECD_02493 0.82 -0.3 2,609,909 + ECD_02493 0.82 +0.6 2,609,910 - ECD_02493 0.83 -1.9 2,610,078 + +0.3 2,610,078 + -0.1 2,610,078 + -0.3 2,610,078 + +0.5 2,610,079 - -1.4 2,610,079 - +0.1 2,610,079 - +0.0 2,610,121 + -0.5 2,610,122 - +0.9 2,610,131 - +0.1 2,610,133 - -0.6 2,610,179 + -0.7 2,610,179 + +0.4 2,610,255 + ECD_02494 0.24 +1.6 2,610,255 + ECD_02494 0.24 +0.1 2,610,319 + ECD_02494 0.37 +1.3 2,610,367 - ECD_02494 0.47 -0.5 2,610,417 + ECD_02494 0.58 +0.3 2,610,421 + ECD_02494 0.58 -1.5 2,610,421 + ECD_02494 0.58 -0.9 2,610,421 + ECD_02494 0.58 +0.4 2,610,421 + ECD_02494 0.58 +0.1 2,610,421 + ECD_02494 0.58 +1.3 2,610,421 + ECD_02494 0.58 -0.4 2,610,422 - ECD_02494 0.59 -1.7 2,610,422 - ECD_02494 0.59 +1.1 2,610,422 - ECD_02494 0.59 -0.0 2,610,422 - ECD_02494 0.59 -1.2 2,610,422 - ECD_02494 0.59 +2.7 2,610,436 + ECD_02494 0.61 -0.3 2,610,436 + ECD_02494 0.61 -0.0 2,610,436 + ECD_02494 0.61 -0.7 2,610,436 + ECD_02494 0.61 +0.1 2,610,449 + ECD_02494 0.64 -0.9 2,610,450 - ECD_02494 0.64 +0.6 2,610,450 - ECD_02494 0.64 -1.2 2,610,450 - ECD_02494 0.64 -0.9 2,610,490 - ECD_02494 0.73 +0.1 2,610,490 - ECD_02494 0.73 +0.0 2,610,610 - -2.0 2,610,610 - +0.1 2,610,638 + +0.3
Or see this region's nucleotide sequence