Strain Fitness in Escherichia coli BL21 around ECD_02446

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02444 and ECD_02445 are separated by 44 nucleotidesECD_02445 and ECD_02446 are separated by 60 nucleotidesECD_02446 and ECD_02447 overlap by 11 nucleotidesECD_02447 and ECD_02448 are separated by 164 nucleotides ECD_02444: ECD_02444 - fused nitric oxide dioxygenase/dihydropteridine reductase 2, at 2,551,640 to 2,552,830 _02444 ECD_02445: ECD_02445 - regulatory protein P-II for glutamine synthetase, at 2,552,875 to 2,553,213 _02445 ECD_02446: ECD_02446 - response regulator regulating glmY sRNA in two-component system with sensor protein GlrK, at 2,553,274 to 2,554,608 _02446 ECD_02447: ECD_02447 - putative outer membrane protein modulating the QseEF response, at 2,554,598 to 2,555,311 _02447 ECD_02448: ECD_02448 - sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR, at 2,555,476 to 2,556,903 _02448 Position (kb) 2553 2554 2555Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2552.293 kb on + strand, within ECD_02444at 2552.326 kb on - strand, within ECD_02444at 2552.763 kb on + strandat 2552.766 kb on + strandat 2552.828 kb on + strandat 2552.947 kb on - strand, within ECD_02445at 2553.061 kb on - strand, within ECD_02445at 2553.061 kb on - strand, within ECD_02445at 2553.061 kb on - strand, within ECD_02445at 2553.062 kb on + strand, within ECD_02445at 2553.062 kb on + strand, within ECD_02445at 2553.063 kb on - strand, within ECD_02445at 2553.063 kb on - strand, within ECD_02445at 2553.252 kb on - strandat 2553.264 kb on + strandat 2553.265 kb on - strandat 2553.265 kb on - strandat 2553.265 kb on - strandat 2553.404 kb on + strandat 2553.404 kb on + strandat 2553.597 kb on + strand, within ECD_02446at 2553.621 kb on + strand, within ECD_02446at 2553.621 kb on + strand, within ECD_02446at 2553.622 kb on - strand, within ECD_02446at 2553.729 kb on - strand, within ECD_02446at 2553.843 kb on + strand, within ECD_02446at 2554.036 kb on - strand, within ECD_02446at 2554.036 kb on - strand, within ECD_02446at 2554.039 kb on - strand, within ECD_02446at 2554.039 kb on - strand, within ECD_02446at 2554.044 kb on + strand, within ECD_02446at 2554.044 kb on + strand, within ECD_02446at 2554.057 kb on - strand, within ECD_02446at 2554.269 kb on - strand, within ECD_02446at 2554.271 kb on - strand, within ECD_02446at 2554.306 kb on - strand, within ECD_02446at 2554.344 kb on + strand, within ECD_02446at 2554.345 kb on - strand, within ECD_02446at 2554.417 kb on - strand, within ECD_02446at 2554.453 kb on + strand, within ECD_02446at 2554.454 kb on - strand, within ECD_02446at 2554.520 kb on + strandat 2554.520 kb on + strandat 2554.521 kb on - strandat 2554.585 kb on + strandat 2554.586 kb on - strandat 2554.599 kb on + strandat 2554.600 kb on - strandat 2554.760 kb on + strand, within ECD_02447at 2554.760 kb on + strand, within ECD_02447at 2554.786 kb on + strand, within ECD_02447at 2554.786 kb on + strand, within ECD_02447at 2554.787 kb on - strand, within ECD_02447at 2554.884 kb on + strand, within ECD_02447at 2554.916 kb on - strand, within ECD_02447at 2554.920 kb on - strand, within ECD_02447at 2554.996 kb on + strand, within ECD_02447at 2554.997 kb on - strand, within ECD_02447at 2554.997 kb on - strand, within ECD_02447at 2555.026 kb on - strand, within ECD_02447at 2555.119 kb on + strand, within ECD_02447at 2555.161 kb on - strand, within ECD_02447at 2555.218 kb on + strand, within ECD_02447at 2555.324 kb on + strandat 2555.394 kb on + strandat 2555.394 kb on + strandat 2555.394 kb on + strandat 2555.394 kb on + strandat 2555.399 kb on - strandat 2555.403 kb on + strandat 2555.404 kb on - strandat 2555.404 kb on - strandat 2555.404 kb on - strandat 2555.404 kb on - strandat 2555.445 kb on + strandat 2555.571 kb on + strandat 2555.572 kb on - strandat 2555.591 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
2,552,293 + ECD_02444 0.55 -0.7
2,552,326 - ECD_02444 0.58 -0.7
2,552,763 + +0.8
2,552,766 + -0.3
2,552,828 + +0.4
2,552,947 - ECD_02445 0.21 -1.5
2,553,061 - ECD_02445 0.55 -0.0
2,553,061 - ECD_02445 0.55 -1.9
2,553,061 - ECD_02445 0.55 -0.0
2,553,062 + ECD_02445 0.55 -1.4
2,553,062 + ECD_02445 0.55 -1.4
2,553,063 - ECD_02445 0.55 -0.5
2,553,063 - ECD_02445 0.55 +0.1
2,553,252 - -0.6
2,553,264 + -0.5
2,553,265 - +0.6
2,553,265 - -0.1
2,553,265 - -0.7
2,553,404 + +0.4
2,553,404 + -0.6
2,553,597 + ECD_02446 0.24 +0.4
2,553,621 + ECD_02446 0.26 +0.8
2,553,621 + ECD_02446 0.26 +0.9
2,553,622 - ECD_02446 0.26 -0.1
2,553,729 - ECD_02446 0.34 +0.9
2,553,843 + ECD_02446 0.43 -1.0
2,554,036 - ECD_02446 0.57 -0.3
2,554,036 - ECD_02446 0.57 +1.3
2,554,039 - ECD_02446 0.57 +0.6
2,554,039 - ECD_02446 0.57 +0.4
2,554,044 + ECD_02446 0.58 +0.1
2,554,044 + ECD_02446 0.58 +0.4
2,554,057 - ECD_02446 0.59 +0.6
2,554,269 - ECD_02446 0.75 +0.1
2,554,271 - ECD_02446 0.75 +1.3
2,554,306 - ECD_02446 0.77 +0.1
2,554,344 + ECD_02446 0.80 -0.1
2,554,345 - ECD_02446 0.80 +0.8
2,554,417 - ECD_02446 0.86 -0.3
2,554,453 + ECD_02446 0.88 +2.3
2,554,454 - ECD_02446 0.88 +1.3
2,554,520 + +1.5
2,554,520 + -0.5
2,554,521 - -1.1
2,554,585 + +0.9
2,554,586 - +0.9
2,554,599 + +0.6
2,554,600 - +0.6
2,554,760 + ECD_02447 0.23 +0.8
2,554,760 + ECD_02447 0.23 +0.0
2,554,786 + ECD_02447 0.26 -0.4
2,554,786 + ECD_02447 0.26 +0.8
2,554,787 - ECD_02447 0.26 +0.8
2,554,884 + ECD_02447 0.40 +0.0
2,554,916 - ECD_02447 0.45 -0.5
2,554,920 - ECD_02447 0.45 -1.9
2,554,996 + ECD_02447 0.56 +1.9
2,554,997 - ECD_02447 0.56 +0.7
2,554,997 - ECD_02447 0.56 +0.1
2,555,026 - ECD_02447 0.60 +0.6
2,555,119 + ECD_02447 0.73 +1.4
2,555,161 - ECD_02447 0.79 -0.3
2,555,218 + ECD_02447 0.87 +0.5
2,555,324 + +0.1
2,555,394 + +1.0
2,555,394 + -3.1
2,555,394 + +0.7
2,555,394 + +0.5
2,555,399 - -1.4
2,555,403 + +1.3
2,555,404 - -0.1
2,555,404 - +0.9
2,555,404 - +0.5
2,555,404 - +0.4
2,555,445 + +0.8
2,555,571 + +0.4
2,555,572 - -0.6
2,555,591 - +0.6

Or see this region's nucleotide sequence