Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02415 and ECD_02416 are separated by 57 nucleotides ECD_02416 and ECD_02417 are separated by 11 nucleotides ECD_02417 and ECD_02418 are separated by 1 nucleotides ECD_02418 and ECD_02419 are separated by 16 nucleotides ECD_02419 and ECD_02420 are separated by 95 nucleotides ECD_02420 and ECD_02421 are separated by 16 nucleotides
ECD_02415: ECD_02415 - aminopeptidase B, at 2,521,000 to 2,522,283
_02415
ECD_02416: ECD_02416 - Fe(2+) donor and activity modulator for cysteine desulfurase, at 2,522,341 to 2,522,541
_02416
ECD_02417: ECD_02417 - [2Fe-2S] ferredoxin, at 2,522,553 to 2,522,888
_02417
ECD_02418: ECD_02418 - DnaK-like molecular chaperone specific for IscU, at 2,522,890 to 2,524,740
_02418
ECD_02419: ECD_02419 - HscA co-chaperone, J domain-containing protein Hsc56; IscU-specific chaperone HscAB, at 2,524,757 to 2,525,272
_02419
ECD_02420: ECD_02420 - FeS cluster assembly protein, at 2,525,368 to 2,525,691
_02420
ECD_02421: ECD_02421 - iron-sulfur cluster assembly scaffold protein, at 2,525,708 to 2,526,094
_02421
Position (kb)
2522
2523
2524
2525 Strain fitness (log2 ratio)
-2
-1
0
1 at 2522.052 kb on - strand, within ECD_02415 at 2522.202 kb on + strand at 2522.213 kb on + strand at 2522.214 kb on - strand at 2522.286 kb on + strand at 2522.496 kb on - strand, within ECD_02416 at 2522.496 kb on - strand, within ECD_02416 at 2522.532 kb on + strand at 2522.533 kb on - strand at 2522.533 kb on - strand at 2522.533 kb on - strand at 2522.533 kb on - strand at 2522.533 kb on - strand at 2522.545 kb on - strand at 2522.545 kb on - strand at 2522.545 kb on - strand at 2522.545 kb on - strand at 2522.545 kb on - strand at 2525.732 kb on - strand at 2525.732 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,522,052 - ECD_02415 0.82 -0.9 2,522,202 + +0.7 2,522,213 + -0.7 2,522,214 - +0.2 2,522,286 + -1.4 2,522,496 - ECD_02416 0.77 -1.2 2,522,496 - ECD_02416 0.77 +0.5 2,522,532 + -0.1 2,522,533 - -0.7 2,522,533 - +0.4 2,522,533 - +0.8 2,522,533 - +0.2 2,522,533 - -2.6 2,522,545 - -2.2 2,522,545 - +0.9 2,522,545 - -1.2 2,522,545 - +1.1 2,522,545 - -0.9 2,525,732 - -0.2 2,525,732 - +0.4
Or see this region's nucleotide sequence