Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02217 and ECD_02218 are separated by 86 nucleotides ECD_02218 and ECD_02219 are separated by 10 nucleotides ECD_02219 and ECD_02220 are separated by 82 nucleotides ECD_02220 and ECD_02221 are separated by 338 nucleotides
ECD_02217: ECD_02217 - putative transporter, at 2,296,772 to 2,298,604
_02217
ECD_02218: ECD_02218 - sugar phosphatase, at 2,298,691 to 2,299,341
_02218
ECD_02219: ECD_02219 - UPF0304 family protein, at 2,299,352 to 2,299,846
_02219
ECD_02220: ECD_02220 - UPF0208 family inner membrane protein, at 2,299,929 to 2,300,384
_02220
ECD_02221: ECD_02221 - acetate kinase A and propionate kinase 2, at 2,300,723 to 2,301,925
_02221
Position (kb)
2299
2300 Strain fitness (log2 ratio)
-2
-1
0
1 at 2298.440 kb on - strand at 2298.440 kb on - strand at 2298.461 kb on + strand at 2298.461 kb on + strand at 2298.703 kb on - strand at 2298.732 kb on + strand at 2298.911 kb on + strand, within ECD_02218 at 2298.912 kb on - strand, within ECD_02218 at 2298.985 kb on + strand, within ECD_02218 at 2299.045 kb on - strand, within ECD_02218 at 2299.045 kb on - strand, within ECD_02218 at 2299.053 kb on + strand, within ECD_02218 at 2299.364 kb on - strand at 2299.423 kb on + strand, within ECD_02219 at 2299.531 kb on - strand, within ECD_02219 at 2299.531 kb on - strand, within ECD_02219 at 2299.531 kb on - strand, within ECD_02219 at 2299.642 kb on - strand, within ECD_02219 at 2299.642 kb on - strand, within ECD_02219 at 2299.642 kb on - strand, within ECD_02219 at 2299.664 kb on - strand, within ECD_02219 at 2299.722 kb on - strand, within ECD_02219 at 2299.742 kb on - strand, within ECD_02219 at 2299.789 kb on + strand, within ECD_02219 at 2299.804 kb on - strand at 2299.820 kb on - strand at 2299.820 kb on - strand at 2299.859 kb on + strand at 2299.860 kb on - strand at 2299.860 kb on - strand at 2299.870 kb on + strand at 2299.896 kb on - strand at 2300.082 kb on - strand, within ECD_02220 at 2300.214 kb on - strand, within ECD_02220 at 2300.349 kb on - strand at 2300.407 kb on - strand at 2300.514 kb on + strand at 2300.521 kb on + strand at 2300.546 kb on + strand at 2300.703 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,298,440 - -0.1 2,298,440 - -0.5 2,298,461 + -0.1 2,298,461 + +0.3 2,298,703 - +0.5 2,298,732 + -2.1 2,298,911 + ECD_02218 0.34 -0.7 2,298,912 - ECD_02218 0.34 +0.4 2,298,985 + ECD_02218 0.45 -0.9 2,299,045 - ECD_02218 0.54 -0.2 2,299,045 - ECD_02218 0.54 -0.0 2,299,053 + ECD_02218 0.56 +0.6 2,299,364 - -0.5 2,299,423 + ECD_02219 0.14 +0.0 2,299,531 - ECD_02219 0.36 +0.5 2,299,531 - ECD_02219 0.36 +0.1 2,299,531 - ECD_02219 0.36 +0.6 2,299,642 - ECD_02219 0.59 -0.1 2,299,642 - ECD_02219 0.59 -0.9 2,299,642 - ECD_02219 0.59 +0.8 2,299,664 - ECD_02219 0.63 +0.4 2,299,722 - ECD_02219 0.75 -0.4 2,299,742 - ECD_02219 0.79 +0.1 2,299,789 + ECD_02219 0.88 -1.5 2,299,804 - -0.2 2,299,820 - +0.4 2,299,820 - +0.8 2,299,859 + +0.7 2,299,860 - -0.3 2,299,860 - +0.3 2,299,870 + -1.0 2,299,896 - -1.0 2,300,082 - ECD_02220 0.34 -0.4 2,300,214 - ECD_02220 0.62 +0.1 2,300,349 - -0.4 2,300,407 - -0.0 2,300,514 + -0.8 2,300,521 + +0.8 2,300,546 + -0.3 2,300,703 + -1.0
Or see this region's nucleotide sequence