Strain Fitness in Escherichia coli BL21 around ECD_02183

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02181 and ECD_02182 overlap by 4 nucleotidesECD_02182 and ECD_02183 overlap by 1 nucleotidesECD_02183 and ECD_02184 overlap by 4 nucleotidesECD_02184 and ECD_02185 overlap by 1 nucleotidesECD_02185 and ECD_02186 overlap by 7 nucleotides ECD_02181: ECD_02181 - fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase, at 2,258,213 to 2,260,195 _02181 ECD_02182: ECD_02182 - undecaprenyl phosphate-alpha-L-ara4FN deformylase, at 2,260,192 to 2,261,082 _02182 ECD_02183: ECD_02183 - 4-amino-4-deoxy-L-arabinose transferase, at 2,261,082 to 2,262,734 _02183 ECD_02184: ECD_02184 - undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit, at 2,262,731 to 2,263,066 _02184 ECD_02185: ECD_02185 - undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit, at 2,263,066 to 2,263,452 _02185 ECD_02186: ECD_02186 - inactive two-component system connector protein, at 2,263,446 to 2,263,712 _02186 Position (kb) 2261 2262 2263Strain fitness (log2 ratio) -1 0 1at 2260.177 kb on + strandat 2260.208 kb on + strandat 2260.208 kb on + strandat 2260.281 kb on + strand, within ECD_02182at 2260.281 kb on + strand, within ECD_02182at 2260.281 kb on + strand, within ECD_02182at 2260.410 kb on + strand, within ECD_02182at 2260.425 kb on + strand, within ECD_02182at 2260.920 kb on + strand, within ECD_02182at 2261.097 kb on + strandat 2261.097 kb on + strandat 2261.130 kb on + strandat 2261.130 kb on + strandat 2261.130 kb on + strandat 2261.131 kb on - strandat 2261.133 kb on + strandat 2261.140 kb on + strandat 2261.248 kb on + strand, within ECD_02183at 2261.285 kb on + strand, within ECD_02183at 2261.436 kb on + strand, within ECD_02183at 2261.457 kb on + strand, within ECD_02183at 2261.472 kb on + strand, within ECD_02183at 2261.647 kb on + strand, within ECD_02183at 2261.859 kb on + strand, within ECD_02183at 2261.859 kb on + strand, within ECD_02183at 2261.859 kb on + strand, within ECD_02183at 2262.026 kb on + strand, within ECD_02183at 2262.069 kb on + strand, within ECD_02183at 2262.069 kb on + strand, within ECD_02183at 2262.113 kb on + strand, within ECD_02183at 2262.152 kb on + strand, within ECD_02183at 2262.219 kb on + strand, within ECD_02183at 2262.273 kb on + strand, within ECD_02183at 2262.368 kb on + strand, within ECD_02183at 2262.434 kb on + strand, within ECD_02183at 2262.434 kb on + strand, within ECD_02183at 2262.434 kb on + strand, within ECD_02183at 2262.434 kb on + strand, within ECD_02183at 2262.434 kb on + strand, within ECD_02183at 2262.434 kb on + strand, within ECD_02183at 2262.504 kb on + strand, within ECD_02183at 2262.536 kb on + strand, within ECD_02183at 2262.536 kb on + strand, within ECD_02183at 2262.593 kb on + strandat 2262.593 kb on + strandat 2262.593 kb on + strandat 2262.653 kb on + strandat 2262.653 kb on + strandat 2263.499 kb on - strand, within ECD_02186at 2263.548 kb on - strand, within ECD_02186at 2263.656 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.660 kb on - strand, within ECD_02186at 2263.719 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
2,260,177 + +0.4
2,260,208 + +0.1
2,260,208 + +1.1
2,260,281 + ECD_02182 0.10 -0.5
2,260,281 + ECD_02182 0.10 +1.0
2,260,281 + ECD_02182 0.10 +0.3
2,260,410 + ECD_02182 0.24 +0.4
2,260,425 + ECD_02182 0.26 +0.5
2,260,920 + ECD_02182 0.82 +1.0
2,261,097 + -0.2
2,261,097 + -0.7
2,261,130 + +0.2
2,261,130 + +0.8
2,261,130 + +0.1
2,261,131 - -1.4
2,261,133 + +0.7
2,261,140 + -0.8
2,261,248 + ECD_02183 0.10 +0.2
2,261,285 + ECD_02183 0.12 -0.0
2,261,436 + ECD_02183 0.21 +0.2
2,261,457 + ECD_02183 0.23 -0.2
2,261,472 + ECD_02183 0.24 +0.6
2,261,647 + ECD_02183 0.34 +1.1
2,261,859 + ECD_02183 0.47 -0.1
2,261,859 + ECD_02183 0.47 +0.4
2,261,859 + ECD_02183 0.47 -0.6
2,262,026 + ECD_02183 0.57 +0.7
2,262,069 + ECD_02183 0.60 -0.3
2,262,069 + ECD_02183 0.60 +0.0
2,262,113 + ECD_02183 0.62 +0.7
2,262,152 + ECD_02183 0.65 +1.5
2,262,219 + ECD_02183 0.69 +0.5
2,262,273 + ECD_02183 0.72 -0.1
2,262,368 + ECD_02183 0.78 -0.5
2,262,434 + ECD_02183 0.82 +0.2
2,262,434 + ECD_02183 0.82 -0.2
2,262,434 + ECD_02183 0.82 +0.3
2,262,434 + ECD_02183 0.82 +0.3
2,262,434 + ECD_02183 0.82 +0.3
2,262,434 + ECD_02183 0.82 -1.2
2,262,504 + ECD_02183 0.86 +0.4
2,262,536 + ECD_02183 0.88 -0.7
2,262,536 + ECD_02183 0.88 +0.1
2,262,593 + +0.6
2,262,593 + -1.2
2,262,593 + -0.7
2,262,653 + +0.5
2,262,653 + +0.1
2,263,499 - ECD_02186 0.20 +1.0
2,263,548 - ECD_02186 0.38 +1.4
2,263,656 - ECD_02186 0.79 +0.1
2,263,660 - ECD_02186 0.80 +0.3
2,263,660 - ECD_02186 0.80 -0.2
2,263,660 - ECD_02186 0.80 -0.9
2,263,660 - ECD_02186 0.80 +1.4
2,263,660 - ECD_02186 0.80 +0.4
2,263,660 - ECD_02186 0.80 +1.0
2,263,660 - ECD_02186 0.80 -0.0
2,263,719 - +0.2

Or see this region's nucleotide sequence