Strain Fitness in Escherichia coli BL21 around ECD_02029

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02027 and ECD_02028 overlap by 4 nucleotidesECD_02028 and ECD_02029 overlap by 27 nucleotidesECD_02029 and ECD_02030 are separated by 51 nucleotidesECD_02030 and ECD_02031 are separated by 64 nucleotides ECD_02027: ECD_02027 - ADP-ribosylglycohydrolase family protein, at 2,077,890 to 2,078,894 _02027 ECD_02028: ECD_02028 - putative kinase, at 2,078,891 to 2,079,856 _02028 ECD_02029: ECD_02029 - putative DNA-binding transcriptional regulator, at 2,079,830 to 2,080,576 _02029 ECD_02030: ECD_02030 - putative family 25 glycosyl hydrolase, at 2,080,628 to 2,081,446 _02030 ECD_02031: ECD_02031 - hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase, at 2,081,511 to 2,082,311 _02031 Position (kb) 2079 2080 2081Strain fitness (log2 ratio) -2 -1 0 1at 2078.847 kb on + strandat 2078.869 kb on - strandat 2078.929 kb on - strandat 2079.171 kb on + strand, within ECD_02028at 2079.430 kb on + strand, within ECD_02028at 2079.623 kb on + strand, within ECD_02028at 2079.714 kb on + strand, within ECD_02028at 2079.832 kb on - strandat 2079.832 kb on - strandat 2079.854 kb on + strandat 2079.889 kb on + strandat 2080.499 kb on - strand, within ECD_02029at 2080.685 kb on - strandat 2080.929 kb on - strand, within ECD_02030at 2081.055 kb on + strand, within ECD_02030at 2081.056 kb on - strand, within ECD_02030at 2081.094 kb on - strand, within ECD_02030at 2081.254 kb on - strand, within ECD_02030at 2081.313 kb on + strand, within ECD_02030at 2081.439 kb on - strandat 2081.498 kb on + strandat 2081.500 kb on + strandat 2081.503 kb on + strandat 2081.503 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,078,847 + +0.2
2,078,869 - -0.8
2,078,929 - +1.3
2,079,171 + ECD_02028 0.29 -0.3
2,079,430 + ECD_02028 0.56 +0.3
2,079,623 + ECD_02028 0.76 +0.6
2,079,714 + ECD_02028 0.85 +0.2
2,079,832 - -0.7
2,079,832 - -0.9
2,079,854 + -0.8
2,079,889 + -0.2
2,080,499 - ECD_02029 0.90 +0.5
2,080,685 - +1.1
2,080,929 - ECD_02030 0.37 -0.5
2,081,055 + ECD_02030 0.52 +0.2
2,081,056 - ECD_02030 0.52 +0.3
2,081,094 - ECD_02030 0.57 -0.3
2,081,254 - ECD_02030 0.76 -0.2
2,081,313 + ECD_02030 0.84 +0.2
2,081,439 - -2.2
2,081,498 + -0.7
2,081,500 + -0.8
2,081,503 + +0.7
2,081,503 + -0.2

Or see this region's nucleotide sequence