Strain Fitness in Escherichia coli BL21 around ECD_01985

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01983 and ECD_01984 overlap by 4 nucleotidesECD_01984 and ECD_01985 are separated by 190 nucleotidesECD_01985 and ECD_01986 are separated by 145 nucleotides ECD_01983: ECD_01983 - sensory histidine kinase in two-component regulatory system with BaeR, at 2,061,797 to 2,063,200 _01983 ECD_01984: ECD_01984 - response regulator in two-component regulatory system with BaeS, at 2,063,197 to 2,063,919 _01984 ECD_01985: ECD_01985 - UPF0339 family protein, at 2,064,110 to 2,064,442 _01985 ECD_01986: ECD_01986 - putative peptidase, at 2,064,588 to 2,065,949 _01986 Position (kb) 2064 2065Strain fitness (log2 ratio) -1 0 1at 2063.299 kb on + strand, within ECD_01984at 2064.007 kb on - strandat 2064.068 kb on + strandat 2064.068 kb on + strandat 2064.359 kb on + strand, within ECD_01985at 2064.441 kb on - strandat 2064.444 kb on + strandat 2064.502 kb on + strandat 2064.639 kb on + strandat 2064.869 kb on + strand, within ECD_01986at 2064.870 kb on - strand, within ECD_01986at 2064.890 kb on + strand, within ECD_01986at 2064.891 kb on - strand, within ECD_01986at 2065.131 kb on + strand, within ECD_01986at 2065.188 kb on + strand, within ECD_01986at 2065.189 kb on - strand, within ECD_01986at 2065.232 kb on - strand, within ECD_01986at 2065.338 kb on + strand, within ECD_01986at 2065.339 kb on - strand, within ECD_01986at 2065.371 kb on + strand, within ECD_01986at 2065.412 kb on - strand, within ECD_01986

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,063,299 + ECD_01984 0.14 -1.1
2,064,007 - +1.1
2,064,068 + -1.0
2,064,068 + -0.6
2,064,359 + ECD_01985 0.75 +0.3
2,064,441 - +1.2
2,064,444 + -0.3
2,064,502 + +0.6
2,064,639 + +0.0
2,064,869 + ECD_01986 0.21 +0.1
2,064,870 - ECD_01986 0.21 -0.1
2,064,890 + ECD_01986 0.22 -0.4
2,064,891 - ECD_01986 0.22 -0.0
2,065,131 + ECD_01986 0.40 -0.5
2,065,188 + ECD_01986 0.44 +0.8
2,065,189 - ECD_01986 0.44 +0.2
2,065,232 - ECD_01986 0.47 -0.5
2,065,338 + ECD_01986 0.55 +0.1
2,065,339 - ECD_01986 0.55 -0.2
2,065,371 + ECD_01986 0.57 -1.2
2,065,412 - ECD_01986 0.60 +0.6

Or see this region's nucleotide sequence