Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01983 and ECD_01984 overlap by 4 nucleotides ECD_01984 and ECD_01985 are separated by 190 nucleotides ECD_01985 and ECD_01986 are separated by 145 nucleotides
ECD_01983: ECD_01983 - sensory histidine kinase in two-component regulatory system with BaeR, at 2,061,797 to 2,063,200
_01983
ECD_01984: ECD_01984 - response regulator in two-component regulatory system with BaeS, at 2,063,197 to 2,063,919
_01984
ECD_01985: ECD_01985 - UPF0339 family protein, at 2,064,110 to 2,064,442
_01985
ECD_01986: ECD_01986 - putative peptidase, at 2,064,588 to 2,065,949
_01986
Position (kb)
2064
2065 Strain fitness (log2 ratio)
-1
0
1 at 2063.299 kb on + strand, within ECD_01984 at 2064.007 kb on - strand at 2064.068 kb on + strand at 2064.068 kb on + strand at 2064.359 kb on + strand, within ECD_01985 at 2064.441 kb on - strand at 2064.444 kb on + strand at 2064.502 kb on + strand at 2064.639 kb on + strand at 2064.869 kb on + strand, within ECD_01986 at 2064.870 kb on - strand, within ECD_01986 at 2064.890 kb on + strand, within ECD_01986 at 2064.891 kb on - strand, within ECD_01986 at 2065.131 kb on + strand, within ECD_01986 at 2065.188 kb on + strand, within ECD_01986 at 2065.189 kb on - strand, within ECD_01986 at 2065.232 kb on - strand, within ECD_01986 at 2065.338 kb on + strand, within ECD_01986 at 2065.339 kb on - strand, within ECD_01986 at 2065.371 kb on + strand, within ECD_01986 at 2065.412 kb on - strand, within ECD_01986
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,063,299 + ECD_01984 0.14 -1.1 2,064,007 - +1.1 2,064,068 + -1.0 2,064,068 + -0.6 2,064,359 + ECD_01985 0.75 +0.3 2,064,441 - +1.2 2,064,444 + -0.3 2,064,502 + +0.6 2,064,639 + +0.0 2,064,869 + ECD_01986 0.21 +0.1 2,064,870 - ECD_01986 0.21 -0.1 2,064,890 + ECD_01986 0.22 -0.4 2,064,891 - ECD_01986 0.22 -0.0 2,065,131 + ECD_01986 0.40 -0.5 2,065,188 + ECD_01986 0.44 +0.8 2,065,189 - ECD_01986 0.44 +0.2 2,065,232 - ECD_01986 0.47 -0.5 2,065,338 + ECD_01986 0.55 +0.1 2,065,339 - ECD_01986 0.55 -0.2 2,065,371 + ECD_01986 0.57 -1.2 2,065,412 - ECD_01986 0.60 +0.6
Or see this region's nucleotide sequence