Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01979 and ECD_01980 overlap by 1 nucleotides ECD_01980 and ECD_01981 are separated by 0 nucleotides
ECD_01979: ECD_01979 - multidrug efflux system, subunit A, at 2,052,937 to 2,054,184
_01979
ECD_01980: ECD_01980 - multidrug efflux system, subunit B, at 2,054,184 to 2,057,306
_01980
ECD_01981: ECD_01981 - multidrug efflux system, subunit C, at 2,057,307 to 2,060,384
_01981
Position (kb)
2054
2055
2056
2057
2058 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2053.239 kb on - strand, within ECD_01979 at 2053.401 kb on - strand, within ECD_01979 at 2053.415 kb on + strand, within ECD_01979 at 2053.766 kb on + strand, within ECD_01979 at 2053.824 kb on + strand, within ECD_01979 at 2054.232 kb on - strand at 2054.533 kb on + strand, within ECD_01980 at 2054.931 kb on + strand, within ECD_01980 at 2054.932 kb on - strand, within ECD_01980 at 2055.084 kb on - strand, within ECD_01980 at 2055.089 kb on + strand, within ECD_01980 at 2055.255 kb on - strand, within ECD_01980 at 2056.338 kb on + strand, within ECD_01980 at 2056.443 kb on + strand, within ECD_01980 at 2056.443 kb on + strand, within ECD_01980 at 2056.815 kb on + strand, within ECD_01980 at 2056.816 kb on - strand, within ECD_01980 at 2057.055 kb on + strand at 2057.056 kb on - strand at 2057.238 kb on + strand at 2057.304 kb on + strand at 2057.396 kb on + strand at 2057.751 kb on + strand, within ECD_01981 at 2057.752 kb on - strand, within ECD_01981 at 2058.010 kb on + strand, within ECD_01981 at 2058.182 kb on + strand, within ECD_01981
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,053,239 - ECD_01979 0.24 -0.7 2,053,401 - ECD_01979 0.37 -0.1 2,053,415 + ECD_01979 0.38 -1.5 2,053,766 + ECD_01979 0.66 -2.4 2,053,824 + ECD_01979 0.71 +0.1 2,054,232 - +1.4 2,054,533 + ECD_01980 0.11 +0.7 2,054,931 + ECD_01980 0.24 +1.1 2,054,932 - ECD_01980 0.24 +0.5 2,055,084 - ECD_01980 0.29 +1.0 2,055,089 + ECD_01980 0.29 +0.1 2,055,255 - ECD_01980 0.34 +0.1 2,056,338 + ECD_01980 0.69 -0.3 2,056,443 + ECD_01980 0.72 -0.8 2,056,443 + ECD_01980 0.72 +0.4 2,056,815 + ECD_01980 0.84 +1.1 2,056,816 - ECD_01980 0.84 +0.4 2,057,055 + +0.2 2,057,056 - -0.2 2,057,238 + +0.9 2,057,304 + +1.1 2,057,396 + +1.5 2,057,751 + ECD_01981 0.14 +0.3 2,057,752 - ECD_01981 0.14 -0.5 2,058,010 + ECD_01981 0.23 -3.1 2,058,182 + ECD_01981 0.28 +0.4
Or see this region's nucleotide sequence