Strain Fitness in Escherichia coli BL21 around ECD_01980

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01979 and ECD_01980 overlap by 1 nucleotidesECD_01980 and ECD_01981 are separated by 0 nucleotides ECD_01979: ECD_01979 - multidrug efflux system, subunit A, at 2,052,937 to 2,054,184 _01979 ECD_01980: ECD_01980 - multidrug efflux system, subunit B, at 2,054,184 to 2,057,306 _01980 ECD_01981: ECD_01981 - multidrug efflux system, subunit C, at 2,057,307 to 2,060,384 _01981 Position (kb) 2054 2055 2056 2057 2058Strain fitness (log2 ratio) -3 -2 -1 0 1at 2053.239 kb on - strand, within ECD_01979at 2053.401 kb on - strand, within ECD_01979at 2053.415 kb on + strand, within ECD_01979at 2053.766 kb on + strand, within ECD_01979at 2053.824 kb on + strand, within ECD_01979at 2054.232 kb on - strandat 2054.533 kb on + strand, within ECD_01980at 2054.931 kb on + strand, within ECD_01980at 2054.932 kb on - strand, within ECD_01980at 2055.084 kb on - strand, within ECD_01980at 2055.089 kb on + strand, within ECD_01980at 2055.255 kb on - strand, within ECD_01980at 2056.338 kb on + strand, within ECD_01980at 2056.443 kb on + strand, within ECD_01980at 2056.443 kb on + strand, within ECD_01980at 2056.815 kb on + strand, within ECD_01980at 2056.816 kb on - strand, within ECD_01980at 2057.055 kb on + strandat 2057.056 kb on - strandat 2057.238 kb on + strandat 2057.304 kb on + strandat 2057.396 kb on + strandat 2057.751 kb on + strand, within ECD_01981at 2057.752 kb on - strand, within ECD_01981at 2058.010 kb on + strand, within ECD_01981at 2058.182 kb on + strand, within ECD_01981

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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2,053,239 - ECD_01979 0.24 -0.7
2,053,401 - ECD_01979 0.37 -0.1
2,053,415 + ECD_01979 0.38 -1.5
2,053,766 + ECD_01979 0.66 -2.4
2,053,824 + ECD_01979 0.71 +0.1
2,054,232 - +1.4
2,054,533 + ECD_01980 0.11 +0.7
2,054,931 + ECD_01980 0.24 +1.1
2,054,932 - ECD_01980 0.24 +0.5
2,055,084 - ECD_01980 0.29 +1.0
2,055,089 + ECD_01980 0.29 +0.1
2,055,255 - ECD_01980 0.34 +0.1
2,056,338 + ECD_01980 0.69 -0.3
2,056,443 + ECD_01980 0.72 -0.8
2,056,443 + ECD_01980 0.72 +0.4
2,056,815 + ECD_01980 0.84 +1.1
2,056,816 - ECD_01980 0.84 +0.4
2,057,055 + +0.2
2,057,056 - -0.2
2,057,238 + +0.9
2,057,304 + +1.1
2,057,396 + +1.5
2,057,751 + ECD_01981 0.14 +0.3
2,057,752 - ECD_01981 0.14 -0.5
2,058,010 + ECD_01981 0.23 -3.1
2,058,182 + ECD_01981 0.28 +0.4

Or see this region's nucleotide sequence