Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01974 and ECD_01975 are separated by 133 nucleotides ECD_01975 and ECD_01976 are separated by 12 nucleotides
ECD_01974: ECD_01974 - 3-methyl-adenine DNA glycosylase II, at 2,045,691 to 2,046,539
_01974
ECD_01975: ECD_01975 - Hsp70 chaperone family protein, at 2,046,673 to 2,048,025
_01975
ECD_01976: ECD_01976 - protein kinase-related putative non-specific DNA-binding protein, at 2,048,038 to 2,049,978
_01976
Position (kb)
2046
2047
2048
2049 Strain fitness (log2 ratio)
-2
-1
0
1 at 2045.744 kb on - strand at 2045.958 kb on + strand, within ECD_01974 at 2045.959 kb on - strand, within ECD_01974 at 2046.021 kb on - strand, within ECD_01974 at 2046.086 kb on - strand, within ECD_01974 at 2046.116 kb on - strand, within ECD_01974 at 2046.174 kb on + strand, within ECD_01974 at 2046.437 kb on - strand, within ECD_01974 at 2046.437 kb on - strand, within ECD_01974 at 2046.536 kb on - strand at 2046.536 kb on - strand at 2046.691 kb on + strand at 2046.691 kb on + strand at 2046.823 kb on + strand, within ECD_01975 at 2046.824 kb on - strand, within ECD_01975 at 2047.554 kb on - strand, within ECD_01975 at 2047.573 kb on + strand, within ECD_01975 at 2047.573 kb on + strand, within ECD_01975 at 2047.579 kb on - strand, within ECD_01975 at 2047.883 kb on - strand, within ECD_01975 at 2048.050 kb on + strand at 2048.419 kb on - strand, within ECD_01976 at 2048.619 kb on - strand, within ECD_01976 at 2048.828 kb on - strand, within ECD_01976
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 2,045,744 - +1.0 2,045,958 + ECD_01974 0.31 +0.8 2,045,959 - ECD_01974 0.32 -2.2 2,046,021 - ECD_01974 0.39 +0.0 2,046,086 - ECD_01974 0.47 +0.7 2,046,116 - ECD_01974 0.50 -0.2 2,046,174 + ECD_01974 0.57 +1.4 2,046,437 - ECD_01974 0.88 +0.4 2,046,437 - ECD_01974 0.88 +0.4 2,046,536 - -0.2 2,046,536 - -0.0 2,046,691 + +0.9 2,046,691 + +1.1 2,046,823 + ECD_01975 0.11 +0.3 2,046,824 - ECD_01975 0.11 -0.1 2,047,554 - ECD_01975 0.65 +0.6 2,047,573 + ECD_01975 0.67 -0.2 2,047,573 + ECD_01975 0.67 +1.4 2,047,579 - ECD_01975 0.67 +1.6 2,047,883 - ECD_01975 0.89 +0.4 2,048,050 + +0.1 2,048,419 - ECD_01976 0.20 +0.6 2,048,619 - ECD_01976 0.30 +0.5 2,048,828 - ECD_01976 0.41 +1.6
Or see this region's nucleotide sequence