Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01907 and ECD_01908 overlap by 68 nucleotides ECD_01908 and ECD_01909 are separated by 288 nucleotides ECD_01909 and ECD_01910 are separated by 324 nucleotides ECD_01910 and ECD_01911 are separated by 171 nucleotides
ECD_01907: ECD_01907 - hypothetical protein, at 1,973,727 to 1,974,161
_01907
ECD_01908: ECD_01908 - hypothetical protein, at 1,974,094 to 1,974,504
_01908
ECD_01909: ECD_01909 - hypothetical protein, at 1,974,793 to 1,974,951
_01909
ECD_01910: ECD_01910 - UPF0265 family protein, at 1,975,276 to 1,975,605
_01910
ECD_01911: ECD_01911 - putative transporter, FUSC family inner membrane protein, at 1,975,777 to 1,976,835
_01911
Position (kb) 1974
1975 Strain fitness (log2 ratio) -2
-1
0
1 at 1973.813 kb on - strand, within ECD_01907 at 1973.850 kb on - strand, within ECD_01907 at 1973.999 kb on - strand, within ECD_01907 at 1974.010 kb on + strand, within ECD_01907 at 1974.043 kb on + strand, within ECD_01907 at 1974.052 kb on + strand, within ECD_01907 at 1974.053 kb on - strand, within ECD_01907 at 1974.128 kb on + strand at 1974.128 kb on + strand at 1974.129 kb on - strand at 1974.441 kb on + strand, within ECD_01908 at 1974.633 kb on + strand at 1974.759 kb on + strand at 1974.795 kb on - strand at 1975.099 kb on + strand at 1975.330 kb on - strand, within ECD_01910 at 1975.371 kb on - strand, within ECD_01910 at 1975.612 kb on - strand at 1975.621 kb on - strand at 1975.722 kb on - strand at 1975.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,973,813 - ECD_01907 0.20 +1.3 1,973,850 - ECD_01907 0.28 +0.0 1,973,999 - ECD_01907 0.63 +0.8 1,974,010 + ECD_01907 0.65 +0.1 1,974,043 + ECD_01907 0.73 +0.3 1,974,052 + ECD_01907 0.75 +1.0 1,974,053 - ECD_01907 0.75 +0.0 1,974,128 + +0.7 1,974,128 + -0.1 1,974,129 - +0.4 1,974,441 + ECD_01908 0.84 -2.1 1,974,633 + -0.5 1,974,759 + -0.3 1,974,795 - +0.1 1,975,099 + -0.1 1,975,330 - ECD_01910 0.16 +1.3 1,975,371 - ECD_01910 0.29 -0.0 1,975,612 - -1.2 1,975,621 - +0.5 1,975,722 - +0.8 1,975,860 - +0.9
Or see this region's nucleotide sequence