Strain Fitness in Escherichia coli BL21 around ECD_01890

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01889 and ECD_04329 are separated by 22 nucleotidesECD_04329 and ECD_t00032 are separated by 304 nucleotidesECD_t00032 and ECD_01890 are separated by 93 nucleotidesECD_01890 and ECD_t00033 are separated by 100 nucleotidesECD_t00033 and ECD_01891 are separated by 238 nucleotides ECD_01889: ECD_01889 - cytochrome b561-like protein, at 1,947,515 to 1,948,045 _01889 ECD_04329: ECD_04329 - hypothetical protein, at 1,948,068 to 1,948,310 _04329 ECD_t00032: ECD_t00032 - tRNA-Ser, at 1,948,615 to 1,948,704 _t00032 ECD_01890: ECD_01890 - anti-repressor for DgsA(Mlc), at 1,948,798 to 1,949,595 _01890 ECD_t00033: ECD_t00033 - tRNA-Asn, at 1,949,696 to 1,949,771 _t00033 ECD_01891: ECD_01891 - putative adhesin, at 1,950,010 to 1,957,161 _01891 Position (kb) 1948 1949 1950Strain fitness (log2 ratio) -1 0 1at 1947.943 kb on + strand, within ECD_01889at 1948.009 kb on + strandat 1948.012 kb on + strandat 1948.093 kb on + strand, within ECD_04329at 1948.551 kb on - strandat 1948.600 kb on - strandat 1948.745 kb on - strandat 1948.803 kb on + strandat 1949.140 kb on - strand, within ECD_01890at 1949.298 kb on + strand, within ECD_01890at 1950.131 kb on + strandat 1950.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,947,943 + ECD_01889 0.81 -0.5
1,948,009 + +0.6
1,948,012 + +1.2
1,948,093 + ECD_04329 0.10 -0.7
1,948,551 - -0.2
1,948,600 - -0.5
1,948,745 - +0.3
1,948,803 + -0.6
1,949,140 - ECD_01890 0.43 -1.3
1,949,298 + ECD_01890 0.63 -0.4
1,950,131 + +0.5
1,950,514 - +1.4

Or see this region's nucleotide sequence