Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01889 and ECD_04329 are separated by 22 nucleotides ECD_04329 and ECD_t00032 are separated by 304 nucleotides ECD_t00032 and ECD_01890 are separated by 93 nucleotides ECD_01890 and ECD_t00033 are separated by 100 nucleotides ECD_t00033 and ECD_01891 are separated by 238 nucleotides
ECD_01889: ECD_01889 - cytochrome b561-like protein, at 1,947,515 to 1,948,045
_01889
ECD_04329: ECD_04329 - hypothetical protein, at 1,948,068 to 1,948,310
_04329
ECD_t00032: ECD_t00032 - tRNA-Ser, at 1,948,615 to 1,948,704
_t00032
ECD_01890: ECD_01890 - anti-repressor for DgsA(Mlc), at 1,948,798 to 1,949,595
_01890
ECD_t00033: ECD_t00033 - tRNA-Asn, at 1,949,696 to 1,949,771
_t00033
ECD_01891: ECD_01891 - putative adhesin, at 1,950,010 to 1,957,161
_01891
Position (kb)
1948
1949
1950 Strain fitness (log2 ratio)
-1
0
1 at 1947.943 kb on + strand, within ECD_01889 at 1948.009 kb on + strand at 1948.012 kb on + strand at 1948.093 kb on + strand, within ECD_04329 at 1948.551 kb on - strand at 1948.600 kb on - strand at 1948.745 kb on - strand at 1948.803 kb on + strand at 1949.140 kb on - strand, within ECD_01890 at 1949.298 kb on + strand, within ECD_01890 at 1950.131 kb on + strand at 1950.514 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,947,943 + ECD_01889 0.81 -0.5 1,948,009 + +0.6 1,948,012 + +1.2 1,948,093 + ECD_04329 0.10 -0.7 1,948,551 - -0.2 1,948,600 - -0.5 1,948,745 - +0.3 1,948,803 + -0.6 1,949,140 - ECD_01890 0.43 -1.3 1,949,298 + ECD_01890 0.63 -0.4 1,950,131 + +0.5 1,950,514 - +1.4
Or see this region's nucleotide sequence