Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01876 and ECD_t00029 are separated by 195 nucleotides ECD_t00029 and ECD_t00030 are separated by 12 nucleotides ECD_t00030 and ECD_t00031 are separated by 53 nucleotides ECD_t00031 and ECD_01877 are separated by 151 nucleotides ECD_01877 and ECD_01878 are separated by 56 nucleotides
ECD_01876: ECD_01876 - UPF0149 family protein, at 1,936,096 to 1,936,761
_01876
ECD_t00029: ECD_t00029 - tRNA-Leu, at 1,936,957 to 1,937,043
_t00029
ECD_t00030: ECD_t00030 - tRNA-Cys, at 1,937,056 to 1,937,129
_t00030
ECD_t00031: ECD_t00031 - tRNA-Gly, at 1,937,183 to 1,937,258
_t00031
ECD_01877: ECD_01877 - phosphatidylglycerophosphate synthetase, at 1,937,410 to 1,937,958
_01877
ECD_01878: ECD_01878 - excinuclease UvrABC, endonuclease subunit, at 1,938,015 to 1,939,847
_01878
Position (kb)
1937
1938 Strain fitness (log2 ratio)
-2
-1
0
1 at 1936.516 kb on - strand, within ECD_01876 at 1936.516 kb on - strand, within ECD_01876 at 1936.578 kb on - strand, within ECD_01876 at 1936.798 kb on - strand at 1936.803 kb on - strand at 1936.904 kb on - strand at 1936.927 kb on - strand at 1936.941 kb on - strand at 1937.292 kb on - strand at 1937.992 kb on - strand at 1938.124 kb on + strand at 1938.125 kb on - strand at 1938.370 kb on - strand, within ECD_01878 at 1938.460 kb on - strand, within ECD_01878
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,936,516 - ECD_01876 0.63 -0.9 1,936,516 - ECD_01876 0.63 +0.2 1,936,578 - ECD_01876 0.72 +0.3 1,936,798 - -0.3 1,936,803 - +0.5 1,936,904 - -0.0 1,936,927 - -0.8 1,936,941 - -0.4 1,937,292 - +0.2 1,937,992 - +0.5 1,938,124 + -0.7 1,938,125 - -1.9 1,938,370 - ECD_01878 0.19 -0.5 1,938,460 - ECD_01878 0.24 -1.5
Or see this region's nucleotide sequence