Strain Fitness in Escherichia coli BL21 around ECD_01877

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01876 and ECD_t00029 are separated by 195 nucleotidesECD_t00029 and ECD_t00030 are separated by 12 nucleotidesECD_t00030 and ECD_t00031 are separated by 53 nucleotidesECD_t00031 and ECD_01877 are separated by 151 nucleotidesECD_01877 and ECD_01878 are separated by 56 nucleotides ECD_01876: ECD_01876 - UPF0149 family protein, at 1,936,096 to 1,936,761 _01876 ECD_t00029: ECD_t00029 - tRNA-Leu, at 1,936,957 to 1,937,043 _t00029 ECD_t00030: ECD_t00030 - tRNA-Cys, at 1,937,056 to 1,937,129 _t00030 ECD_t00031: ECD_t00031 - tRNA-Gly, at 1,937,183 to 1,937,258 _t00031 ECD_01877: ECD_01877 - phosphatidylglycerophosphate synthetase, at 1,937,410 to 1,937,958 _01877 ECD_01878: ECD_01878 - excinuclease UvrABC, endonuclease subunit, at 1,938,015 to 1,939,847 _01878 Position (kb) 1937 1938Strain fitness (log2 ratio) -2 -1 0 1at 1936.516 kb on - strand, within ECD_01876at 1936.516 kb on - strand, within ECD_01876at 1936.578 kb on - strand, within ECD_01876at 1936.798 kb on - strandat 1936.803 kb on - strandat 1936.904 kb on - strandat 1936.927 kb on - strandat 1936.941 kb on - strandat 1937.292 kb on - strandat 1937.992 kb on - strandat 1938.124 kb on + strandat 1938.125 kb on - strandat 1938.370 kb on - strand, within ECD_01878at 1938.460 kb on - strand, within ECD_01878

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,936,516 - ECD_01876 0.63 -0.9
1,936,516 - ECD_01876 0.63 +0.2
1,936,578 - ECD_01876 0.72 +0.3
1,936,798 - -0.3
1,936,803 - +0.5
1,936,904 - -0.0
1,936,927 - -0.8
1,936,941 - -0.4
1,937,292 - +0.2
1,937,992 - +0.5
1,938,124 + -0.7
1,938,125 - -1.9
1,938,370 - ECD_01878 0.19 -0.5
1,938,460 - ECD_01878 0.24 -1.5

Or see this region's nucleotide sequence