Strain Fitness in Escherichia coli BL21 around ECD_01858

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01857 and ECD_01858 are separated by 144 nucleotidesECD_01858 and ECD_01859 are separated by 20 nucleotides ECD_01857: ECD_01857 - methyl-accepting chemotaxis protein II, at 1,916,948 to 1,918,609 _01857 ECD_01858: ECD_01858 - purine-binding chemotaxis protein, at 1,918,754 to 1,919,257 _01858 ECD_01859: ECD_01859 - fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein, at 1,919,278 to 1,921,242 _01859 Position (kb) 1918 1919 1920Strain fitness (log2 ratio) -1 0 1at 1917.784 kb on - strand, within ECD_01857at 1918.255 kb on + strand, within ECD_01857at 1918.434 kb on - strand, within ECD_01857at 1918.998 kb on - strand, within ECD_01858at 1919.298 kb on + strandat 1919.802 kb on + strand, within ECD_01859at 1920.165 kb on + strand, within ECD_01859at 1920.166 kb on - strand, within ECD_01859at 1920.244 kb on - strand, within ECD_01859

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,917,784 - ECD_01857 0.50 +0.1
1,918,255 + ECD_01857 0.79 +0.3
1,918,434 - ECD_01857 0.89 +0.5
1,918,998 - ECD_01858 0.48 +0.9
1,919,298 + -0.0
1,919,802 + ECD_01859 0.27 +0.7
1,920,165 + ECD_01859 0.45 +0.1
1,920,166 - ECD_01859 0.45 +0.2
1,920,244 - ECD_01859 0.49 +0.4

Or see this region's nucleotide sequence