Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01835 and ECD_01836 are separated by 28 nucleotides ECD_01836 and ECD_01837 are separated by 117 nucleotides ECD_01837 and ECD_01838 are separated by 309 nucleotides ECD_01838 and ECD_01839 overlap by 4 nucleotides
ECD_01835: ECD_01835 - UPF0082 family protein, at 1,893,329 to 1,894,069
_01835
ECD_01836: ECD_01836 - dihydroneopterin triphosphate pyrophosphatase, at 1,894,098 to 1,894,550
_01836
ECD_01837: ECD_01837 - aspartyl-tRNA synthetase, at 1,894,668 to 1,896,440
_01837
ECD_01838: ECD_01838 - isochorismatase family protein, at 1,896,750 to 1,897,316
_01838
ECD_01839: ECD_01839 - UPF0759 family protein, at 1,897,313 to 1,898,131
_01839
Position (kb)
1894
1895
1896
1897 Strain fitness (log2 ratio)
-2
-1
0
1 at 1894.114 kb on - strand at 1894.114 kb on - strand at 1894.152 kb on - strand, within ECD_01836 at 1894.190 kb on - strand, within ECD_01836 at 1894.260 kb on - strand, within ECD_01836 at 1894.291 kb on - strand, within ECD_01836 at 1894.291 kb on - strand, within ECD_01836 at 1894.291 kb on - strand, within ECD_01836 at 1894.291 kb on - strand, within ECD_01836 at 1894.336 kb on - strand, within ECD_01836 at 1894.381 kb on - strand, within ECD_01836 at 1894.502 kb on - strand, within ECD_01836 at 1894.502 kb on - strand, within ECD_01836 at 1894.502 kb on - strand, within ECD_01836 at 1894.502 kb on - strand, within ECD_01836 at 1894.535 kb on - strand at 1894.542 kb on - strand at 1894.542 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.592 kb on - strand at 1894.596 kb on - strand at 1894.596 kb on - strand at 1894.596 kb on - strand at 1894.596 kb on - strand at 1894.596 kb on - strand at 1894.596 kb on - strand at 1894.600 kb on - strand at 1894.600 kb on - strand at 1894.667 kb on - strand at 1896.749 kb on + strand at 1896.750 kb on - strand at 1896.812 kb on - strand, within ECD_01838 at 1896.834 kb on - strand, within ECD_01838 at 1896.947 kb on - strand, within ECD_01838 at 1897.072 kb on - strand, within ECD_01838 at 1897.126 kb on + strand, within ECD_01838 at 1897.126 kb on + strand, within ECD_01838 at 1897.127 kb on - strand, within ECD_01838 at 1897.244 kb on + strand, within ECD_01838 at 1897.259 kb on + strand, within ECD_01838 at 1897.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,894,114 - -0.3 1,894,114 - -0.4 1,894,152 - ECD_01836 0.12 +0.0 1,894,190 - ECD_01836 0.20 -0.5 1,894,260 - ECD_01836 0.36 -0.3 1,894,291 - ECD_01836 0.43 -0.6 1,894,291 - ECD_01836 0.43 -0.8 1,894,291 - ECD_01836 0.43 -0.9 1,894,291 - ECD_01836 0.43 +0.5 1,894,336 - ECD_01836 0.53 +1.3 1,894,381 - ECD_01836 0.62 +1.0 1,894,502 - ECD_01836 0.89 -0.4 1,894,502 - ECD_01836 0.89 -0.9 1,894,502 - ECD_01836 0.89 +0.5 1,894,502 - ECD_01836 0.89 +0.2 1,894,535 - +1.3 1,894,542 - +0.1 1,894,542 - +0.3 1,894,592 - +0.3 1,894,592 - +0.1 1,894,592 - +0.8 1,894,592 - +0.1 1,894,592 - +0.7 1,894,592 - +0.2 1,894,592 - +1.1 1,894,592 - -2.3 1,894,592 - +0.1 1,894,596 - -1.7 1,894,596 - +0.8 1,894,596 - +0.6 1,894,596 - -0.1 1,894,596 - +0.8 1,894,596 - +0.0 1,894,600 - +0.1 1,894,600 - -0.0 1,894,667 - -0.3 1,896,749 + -1.5 1,896,750 - +0.6 1,896,812 - ECD_01838 0.11 -1.0 1,896,834 - ECD_01838 0.15 +0.8 1,896,947 - ECD_01838 0.35 +0.8 1,897,072 - ECD_01838 0.57 +0.6 1,897,126 + ECD_01838 0.66 -1.3 1,897,126 + ECD_01838 0.66 -0.0 1,897,127 - ECD_01838 0.66 -0.9 1,897,244 + ECD_01838 0.87 -0.5 1,897,259 + ECD_01838 0.90 -1.9 1,897,260 - -0.0
Or see this region's nucleotide sequence