Strain Fitness in Escherichia coli BL21 around ECD_01837

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01835 and ECD_01836 are separated by 28 nucleotidesECD_01836 and ECD_01837 are separated by 117 nucleotidesECD_01837 and ECD_01838 are separated by 309 nucleotidesECD_01838 and ECD_01839 overlap by 4 nucleotides ECD_01835: ECD_01835 - UPF0082 family protein, at 1,893,329 to 1,894,069 _01835 ECD_01836: ECD_01836 - dihydroneopterin triphosphate pyrophosphatase, at 1,894,098 to 1,894,550 _01836 ECD_01837: ECD_01837 - aspartyl-tRNA synthetase, at 1,894,668 to 1,896,440 _01837 ECD_01838: ECD_01838 - isochorismatase family protein, at 1,896,750 to 1,897,316 _01838 ECD_01839: ECD_01839 - UPF0759 family protein, at 1,897,313 to 1,898,131 _01839 Position (kb) 1894 1895 1896 1897Strain fitness (log2 ratio) -2 -1 0 1at 1894.114 kb on - strandat 1894.114 kb on - strandat 1894.152 kb on - strand, within ECD_01836at 1894.190 kb on - strand, within ECD_01836at 1894.260 kb on - strand, within ECD_01836at 1894.291 kb on - strand, within ECD_01836at 1894.291 kb on - strand, within ECD_01836at 1894.291 kb on - strand, within ECD_01836at 1894.291 kb on - strand, within ECD_01836at 1894.336 kb on - strand, within ECD_01836at 1894.381 kb on - strand, within ECD_01836at 1894.502 kb on - strand, within ECD_01836at 1894.502 kb on - strand, within ECD_01836at 1894.502 kb on - strand, within ECD_01836at 1894.502 kb on - strand, within ECD_01836at 1894.535 kb on - strandat 1894.542 kb on - strandat 1894.542 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.592 kb on - strandat 1894.596 kb on - strandat 1894.596 kb on - strandat 1894.596 kb on - strandat 1894.596 kb on - strandat 1894.596 kb on - strandat 1894.596 kb on - strandat 1894.600 kb on - strandat 1894.600 kb on - strandat 1894.667 kb on - strandat 1896.749 kb on + strandat 1896.750 kb on - strandat 1896.812 kb on - strand, within ECD_01838at 1896.834 kb on - strand, within ECD_01838at 1896.947 kb on - strand, within ECD_01838at 1897.072 kb on - strand, within ECD_01838at 1897.126 kb on + strand, within ECD_01838at 1897.126 kb on + strand, within ECD_01838at 1897.127 kb on - strand, within ECD_01838at 1897.244 kb on + strand, within ECD_01838at 1897.259 kb on + strand, within ECD_01838at 1897.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,894,114 - -0.3
1,894,114 - -0.4
1,894,152 - ECD_01836 0.12 +0.0
1,894,190 - ECD_01836 0.20 -0.5
1,894,260 - ECD_01836 0.36 -0.3
1,894,291 - ECD_01836 0.43 -0.6
1,894,291 - ECD_01836 0.43 -0.8
1,894,291 - ECD_01836 0.43 -0.9
1,894,291 - ECD_01836 0.43 +0.5
1,894,336 - ECD_01836 0.53 +1.3
1,894,381 - ECD_01836 0.62 +1.0
1,894,502 - ECD_01836 0.89 -0.4
1,894,502 - ECD_01836 0.89 -0.9
1,894,502 - ECD_01836 0.89 +0.5
1,894,502 - ECD_01836 0.89 +0.2
1,894,535 - +1.3
1,894,542 - +0.1
1,894,542 - +0.3
1,894,592 - +0.3
1,894,592 - +0.1
1,894,592 - +0.8
1,894,592 - +0.1
1,894,592 - +0.7
1,894,592 - +0.2
1,894,592 - +1.1
1,894,592 - -2.3
1,894,592 - +0.1
1,894,596 - -1.7
1,894,596 - +0.8
1,894,596 - +0.6
1,894,596 - -0.1
1,894,596 - +0.8
1,894,596 - +0.0
1,894,600 - +0.1
1,894,600 - -0.0
1,894,667 - -0.3
1,896,749 + -1.5
1,896,750 - +0.6
1,896,812 - ECD_01838 0.11 -1.0
1,896,834 - ECD_01838 0.15 +0.8
1,896,947 - ECD_01838 0.35 +0.8
1,897,072 - ECD_01838 0.57 +0.6
1,897,126 + ECD_01838 0.66 -1.3
1,897,126 + ECD_01838 0.66 -0.0
1,897,127 - ECD_01838 0.66 -0.9
1,897,244 + ECD_01838 0.87 -0.5
1,897,259 + ECD_01838 0.90 -1.9
1,897,260 - -0.0

Or see this region's nucleotide sequence