Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01795 and ECD_01796 are separated by 74 nucleotides ECD_01796 and ECD_01797 are separated by 158 nucleotides ECD_01797 and ECD_01798 are separated by 142 nucleotides
ECD_01795: ECD_01795 - putative inner membrane protein, at 1,853,987 to 1,854,274
_01795
ECD_01796: ECD_01796 - regulatory peptide for PhoPQ, feedback inhibition, at 1,854,349 to 1,854,492
_01796
ECD_01797: ECD_01797 - uncharacterized protein, at 1,854,651 to 1,854,890
_01797
ECD_01798: ECD_01798 - KDG regulon transcriptional repressor, at 1,855,033 to 1,855,824
_01798
Position (kb)
1854
1855 Strain fitness (log2 ratio)
-2
-1
0
1 at 1854.014 kb on - strand at 1854.206 kb on - strand, within ECD_01795 at 1854.225 kb on - strand, within ECD_01795 at 1854.225 kb on - strand, within ECD_01795 at 1854.305 kb on - strand at 1854.425 kb on - strand, within ECD_01796 at 1854.512 kb on - strand at 1854.512 kb on - strand at 1854.517 kb on - strand at 1854.517 kb on - strand at 1854.517 kb on - strand at 1854.517 kb on - strand at 1854.519 kb on - strand at 1854.519 kb on - strand at 1854.519 kb on - strand at 1854.559 kb on - strand at 1854.774 kb on + strand, within ECD_01797 at 1854.774 kb on + strand, within ECD_01797 at 1855.104 kb on - strand at 1855.277 kb on - strand, within ECD_01798 at 1855.318 kb on - strand, within ECD_01798 at 1855.428 kb on - strand, within ECD_01798 at 1855.443 kb on - strand, within ECD_01798 at 1855.447 kb on - strand, within ECD_01798 at 1855.447 kb on - strand, within ECD_01798 at 1855.447 kb on - strand, within ECD_01798 at 1855.474 kb on - strand, within ECD_01798 at 1855.504 kb on - strand, within ECD_01798 at 1855.670 kb on - strand, within ECD_01798
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,854,014 - +0.6 1,854,206 - ECD_01795 0.76 +0.6 1,854,225 - ECD_01795 0.83 +0.3 1,854,225 - ECD_01795 0.83 +0.3 1,854,305 - -0.3 1,854,425 - ECD_01796 0.53 +0.2 1,854,512 - -1.2 1,854,512 - -1.3 1,854,517 - +0.8 1,854,517 - +0.8 1,854,517 - -1.5 1,854,517 - -0.4 1,854,519 - -0.9 1,854,519 - -1.9 1,854,519 - -0.2 1,854,559 - +1.7 1,854,774 + ECD_01797 0.51 -0.2 1,854,774 + ECD_01797 0.51 +1.4 1,855,104 - -0.0 1,855,277 - ECD_01798 0.31 -0.1 1,855,318 - ECD_01798 0.36 +0.1 1,855,428 - ECD_01798 0.50 +0.3 1,855,443 - ECD_01798 0.52 +1.0 1,855,447 - ECD_01798 0.52 +0.5 1,855,447 - ECD_01798 0.52 +1.1 1,855,447 - ECD_01798 0.52 +0.5 1,855,474 - ECD_01798 0.56 -0.2 1,855,504 - ECD_01798 0.59 +1.5 1,855,670 - ECD_01798 0.80 -1.1
Or see this region's nucleotide sequence