Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01727 and ECD_01728 are separated by 86 nucleotides ECD_01728 and ECD_01729 overlap by 35 nucleotides ECD_01729 and ECD_01730 are separated by 235 nucleotides ECD_01730 and ECD_01731 are separated by 116 nucleotides
ECD_01727: ECD_01727 - CDP-alcohol phosphatidyltransferase family inner membrane protein, at 1,785,159 to 1,785,779
_01727
ECD_01728: ECD_01728 - CTP pyrophosphohydrolase; also hydrolyzes 2-hydroxy-dATP, 8-hydroxy-dGTP, 5-hydroxy-CTP, dCTP and 5-methyl-dCTP, at 1,785,866 to 1,786,273
_01728
ECD_01729: ECD_01729 - DUF1496 family protein, at 1,786,239 to 1,786,511
_01729
ECD_01730: ECD_01730 - glutamate dehydrogenase, NADP-specific, at 1,786,747 to 1,788,090
_01730
ECD_01731: ECD_01731 - inner membrane protein, at 1,788,207 to 1,789,247
_01731
Position (kb) 1786
1787
1788
1789 Strain fitness (log2 ratio) -1
0
1 at 1785.795 kb on - strand at 1786.670 kb on + strand at 1786.731 kb on + strand at 1786.759 kb on + strand at 1787.632 kb on + strand, within ECD_01730 at 1787.880 kb on + strand, within ECD_01730 at 1788.095 kb on + strand at 1788.153 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,785,795 - +0.5 1,786,670 + +0.3 1,786,731 + +0.8 1,786,759 + -0.3 1,787,632 + ECD_01730 0.66 +0.1 1,787,880 + ECD_01730 0.84 -0.8 1,788,095 + +0.1 1,788,153 + +0.9
Or see this region's nucleotide sequence