Strain Fitness in Escherichia coli BL21 around ECD_01701

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01699 and ECD_01700 are separated by 276 nucleotidesECD_01700 and ECD_01701 are separated by 182 nucleotidesECD_01701 and ECD_01702 are separated by 257 nucleotides ECD_01699: ECD_01699 - uncharacterized protein, at 1,756,763 to 1,757,557 _01699 ECD_01700: ECD_01700 - cell division modulator, at 1,757,834 to 1,758,097 _01700 ECD_01701: ECD_01701 - catalase HPII, heme d-containing, at 1,758,280 to 1,760,541 _01701 ECD_01702: ECD_01702 - chito-oligosaccharide deacetylase, at 1,760,799 to 1,761,548 _01702 Position (kb) 1758 1759 1760 1761Strain fitness (log2 ratio) -1 0 1at 1758.034 kb on - strand, within ECD_01700at 1758.041 kb on - strand, within ECD_01700at 1758.216 kb on + strandat 1758.427 kb on - strandat 1760.921 kb on + strand, within ECD_01702at 1761.162 kb on - strand, within ECD_01702at 1761.332 kb on + strand, within ECD_01702at 1761.332 kb on + strand, within ECD_01702at 1761.333 kb on - strand, within ECD_01702at 1761.538 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,758,034 - ECD_01700 0.76 -0.9
1,758,041 - ECD_01700 0.78 +0.1
1,758,216 + -1.1
1,758,427 - -0.2
1,760,921 + ECD_01702 0.16 +0.2
1,761,162 - ECD_01702 0.48 +0.5
1,761,332 + ECD_01702 0.71 -0.7
1,761,332 + ECD_01702 0.71 +0.9
1,761,333 - ECD_01702 0.71 +0.2
1,761,538 - -0.3

Or see this region's nucleotide sequence