Strain Fitness in Escherichia coli BL21 around ECD_01626

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01625 and ECD_01626 are separated by 127 nucleotidesECD_01626 and ECD_01627 are separated by 234 nucleotides ECD_01625: ECD_01625 - murein DD-endopeptidase, space-maker hydrolase, at 1,679,631 to 1,680,446 _01625 ECD_01626: ECD_01626 - superoxide dismutase, Fe, at 1,680,574 to 1,681,155 _01626 ECD_01627: ECD_01627 - putative MFS transporter, inner membrane protein, at 1,681,390 to 1,682,559 _01627 Position (kb) 1680 1681 1682Strain fitness (log2 ratio) -1 0 1at 1680.153 kb on + strand, within ECD_01625at 1680.208 kb on - strand, within ECD_01625at 1680.239 kb on + strand, within ECD_01625at 1680.556 kb on + strandat 1681.063 kb on + strand, within ECD_01626at 1681.063 kb on + strand, within ECD_01626at 1681.678 kb on - strand, within ECD_01627at 1681.891 kb on - strand, within ECD_01627at 1681.893 kb on - strand, within ECD_01627at 1681.893 kb on - strand, within ECD_01627at 1682.017 kb on - strand, within ECD_01627

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,680,153 + ECD_01625 0.64 -0.2
1,680,208 - ECD_01625 0.71 +0.1
1,680,239 + ECD_01625 0.75 +0.9
1,680,556 + -1.1
1,681,063 + ECD_01626 0.84 -0.9
1,681,063 + ECD_01626 0.84 -0.3
1,681,678 - ECD_01627 0.25 -0.6
1,681,891 - ECD_01627 0.43 -1.7
1,681,893 - ECD_01627 0.43 -0.4
1,681,893 - ECD_01627 0.43 -0.2
1,682,017 - ECD_01627 0.54 +0.4

Or see this region's nucleotide sequence