Strain Fitness in Escherichia coli BL21 around ECD_01580

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01579 and ECD_01580 overlap by 4 nucleotidesECD_01580 and ECD_01581 are separated by 142 nucleotides ECD_01579: ECD_01579 - inhibitor of replication at Ter, DNA-binding protein, at 1,629,456 to 1,630,385 _01579 ECD_01580: ECD_01580 - fumarate hydratase (fumarase C),aerobic Class II, at 1,630,382 to 1,631,785 _01580 ECD_01581: ECD_01581 - fumarate hydratase (fumarase A), aerobic Class I, at 1,631,928 to 1,633,574 _01581 Position (kb) 1630 1631 1632Strain fitness (log2 ratio) -1 0 1 2at 1629.455 kb on + strandat 1629.455 kb on + strandat 1629.553 kb on + strand, within ECD_01579at 1629.553 kb on + strand, within ECD_01579at 1629.983 kb on + strand, within ECD_01579at 1629.983 kb on + strand, within ECD_01579at 1630.101 kb on + strand, within ECD_01579at 1630.322 kb on + strandat 1631.061 kb on + strand, within ECD_01580at 1631.547 kb on - strand, within ECD_01580at 1632.083 kb on + strandat 1632.084 kb on - strandat 1632.236 kb on - strand, within ECD_01581at 1632.236 kb on - strand, within ECD_01581at 1632.542 kb on - strand, within ECD_01581at 1632.542 kb on - strand, within ECD_01581at 1632.605 kb on + strand, within ECD_01581at 1632.606 kb on - strand, within ECD_01581at 1632.702 kb on - strand, within ECD_01581

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,629,455 + +0.4
1,629,455 + +0.9
1,629,553 + ECD_01579 0.10 +0.2
1,629,553 + ECD_01579 0.10 +0.1
1,629,983 + ECD_01579 0.57 +0.5
1,629,983 + ECD_01579 0.57 -0.6
1,630,101 + ECD_01579 0.69 -0.1
1,630,322 + -0.2
1,631,061 + ECD_01580 0.48 +0.9
1,631,547 - ECD_01580 0.83 +1.9
1,632,083 + +1.5
1,632,084 - -1.6
1,632,236 - ECD_01581 0.19 -0.9
1,632,236 - ECD_01581 0.19 -1.7
1,632,542 - ECD_01581 0.37 +0.6
1,632,542 - ECD_01581 0.37 +0.5
1,632,605 + ECD_01581 0.41 +1.6
1,632,606 - ECD_01581 0.41 +0.1
1,632,702 - ECD_01581 0.47 +0.6

Or see this region's nucleotide sequence