Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01194 and ECD_01195 are separated by 269 nucleotides ECD_01195 and ECD_01196 are separated by 136 nucleotides ECD_01196 and ECD_01197 are separated by 43 nucleotides ECD_01197 and ECD_01198 are separated by 326 nucleotides
ECD_01194: ECD_01194 - calcium/sodium:proton antiporter, at 1,258,896 to 1,259,996
_01194
ECD_01195: ECD_01195 - cation transport regulator, at 1,260,266 to 1,260,496
_01195
ECD_01196: ECD_01196 - cation transport regulator, at 1,260,633 to 1,261,349
_01196
ECD_01197: ECD_01197 - putative sulfur relay protein, at 1,261,393 to 1,261,746
_01197
ECD_01198: ECD_01198 - putative invasin, at 1,262,073 to 1,263,326
_01198
Position (kb)
1260
1261
1262 Strain fitness (log2 ratio)
-2
-1
0
1 at 1259.890 kb on - strand at 1260.216 kb on + strand at 1260.236 kb on + strand at 1260.379 kb on + strand, within ECD_01195 at 1260.632 kb on + strand at 1260.650 kb on + strand at 1260.978 kb on + strand, within ECD_01196 at 1261.351 kb on + strand at 1261.471 kb on - strand, within ECD_01197 at 1261.486 kb on - strand, within ECD_01197 at 1262.043 kb on - strand at 1262.236 kb on + strand, within ECD_01198 at 1262.236 kb on + strand, within ECD_01198
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,259,890 - -0.9 1,260,216 + -0.1 1,260,236 + -0.3 1,260,379 + ECD_01195 0.49 +0.1 1,260,632 + -0.1 1,260,650 + -0.2 1,260,978 + ECD_01196 0.48 -2.6 1,261,351 + +1.6 1,261,471 - ECD_01197 0.22 +0.5 1,261,486 - ECD_01197 0.26 +1.7 1,262,043 - -1.2 1,262,236 + ECD_01198 0.13 -1.1 1,262,236 + ECD_01198 0.13 +0.2
Or see this region's nucleotide sequence