Strain Fitness in Escherichia coli BL21 around ECD_01112

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01111 and ECD_01112 are separated by 261 nucleotidesECD_01112 and ECD_01113 overlap by 8 nucleotidesECD_01113 and ECD_01114 overlap by 1 nucleotides ECD_01111: ECD_01111 - inner membrane protein, at 1,176,685 to 1,177,758 _01111 ECD_01112: ECD_01112 - lipoprotein-releasing system transmembrane protein, at 1,178,020 to 1,179,219 _01112 ECD_01113: ECD_01113 - outer membrane-specific lipoprotein transporter subunit, at 1,179,212 to 1,179,913 _01113 ECD_01114: ECD_01114 - lipoprotein-releasing system transmembrane protein, at 1,179,913 to 1,181,157 _01114 Position (kb) 1178 1179 1180Strain fitness (log2 ratio) -1 0 1at 1177.045 kb on - strand, within ECD_01111at 1177.322 kb on + strand, within ECD_01111at 1177.567 kb on - strand, within ECD_01111at 1177.718 kb on - strandat 1177.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,177,045 - ECD_01111 0.34 +0.9
1,177,322 + ECD_01111 0.59 -0.3
1,177,567 - ECD_01111 0.82 +0.5
1,177,718 - +0.2
1,177,839 - -0.9

Or see this region's nucleotide sequence