Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00982 and ECD_04302 are separated by 12 nucleotides ECD_04302 and ECD_00983 are separated by 79 nucleotides ECD_00983 and ECD_00984 are separated by 114 nucleotides
ECD_00982: ECD_00982 - cytochrome bd-II oxidase, subunit II, at 1,044,385 to 1,045,521
_00982
ECD_04302: ECD_04302 - putative cytochrome bd-II oxidase subunit, at 1,045,534 to 1,045,626
_04302
ECD_00983: ECD_00983 - phosphoanhydride phosphorylase, at 1,045,706 to 1,047,004
_00983
ECD_00984: ECD_00984 - tyrosine-protein kinase, role in O-antigen capsule formation, at 1,047,119 to 1,049,299
_00984
Position (kb)
1045
1046
1047
1048 Strain fitness (log2 ratio)
-2
-1
0
1 at 1044.947 kb on + strand, within ECD_00982 at 1045.399 kb on - strand, within ECD_00982 at 1045.399 kb on - strand, within ECD_00982 at 1045.441 kb on + strand at 1045.541 kb on - strand at 1045.544 kb on + strand, within ECD_04302 at 1045.633 kb on + strand at 1045.684 kb on + strand at 1045.932 kb on + strand, within ECD_00983 at 1045.933 kb on - strand, within ECD_00983 at 1046.026 kb on + strand, within ECD_00983 at 1046.107 kb on - strand, within ECD_00983 at 1046.122 kb on + strand, within ECD_00983 at 1046.146 kb on + strand, within ECD_00983 at 1046.147 kb on - strand, within ECD_00983 at 1046.308 kb on + strand, within ECD_00983 at 1046.636 kb on + strand, within ECD_00983 at 1046.668 kb on + strand, within ECD_00983 at 1046.879 kb on - strand at 1047.150 kb on + strand at 1047.154 kb on + strand at 1047.154 kb on + strand at 1047.215 kb on - strand at 1047.725 kb on - strand, within ECD_00984
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,044,947 + ECD_00982 0.49 +0.4 1,045,399 - ECD_00982 0.89 +0.4 1,045,399 - ECD_00982 0.89 -0.5 1,045,441 + +0.8 1,045,541 - +0.7 1,045,544 + ECD_04302 0.11 -0.1 1,045,633 + +0.8 1,045,684 + -0.4 1,045,932 + ECD_00983 0.17 -0.0 1,045,933 - ECD_00983 0.17 -0.6 1,046,026 + ECD_00983 0.25 +1.0 1,046,107 - ECD_00983 0.31 -0.6 1,046,122 + ECD_00983 0.32 +0.5 1,046,146 + ECD_00983 0.34 +0.6 1,046,147 - ECD_00983 0.34 +0.0 1,046,308 + ECD_00983 0.46 -0.2 1,046,636 + ECD_00983 0.72 -0.7 1,046,668 + ECD_00983 0.74 -0.0 1,046,879 - +0.4 1,047,150 + -1.9 1,047,154 + +0.1 1,047,154 + +1.1 1,047,215 - -0.3 1,047,725 - ECD_00984 0.28 -0.0
Or see this region's nucleotide sequence