Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00930 and ECD_00931 are separated by 26 nucleotides ECD_00931 and ECD_00932 are separated by 221 nucleotides ECD_00932 and ECD_00933 are separated by 184 nucleotides
ECD_00930: ECD_00930 - M15A protease-related family periplasmic protein, at 988,165 to 988,713
_00930
ECD_00931: ECD_00931 - putative metal-binding enzyme, at 988,740 to 989,387
_00931
ECD_00932: ECD_00932 - aspartate aminotransferase, PLP-dependent, at 989,609 to 990,799
_00932
ECD_00933: ECD_00933 - outer membrane porin 1a (Ia, at 990,984 to 992,072
_00933
Position (kb) 989
990
991 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 988.657 kb on + strand, within ECD_00930 at 988.683 kb on + strand at 988.751 kb on + strand at 988.789 kb on + strand at 989.024 kb on + strand, within ECD_00931 at 989.119 kb on + strand, within ECD_00931 at 989.119 kb on + strand, within ECD_00931 at 989.212 kb on + strand, within ECD_00931 at 989.270 kb on + strand, within ECD_00931 at 989.299 kb on + strand, within ECD_00931 at 989.351 kb on + strand at 989.840 kb on - strand, within ECD_00932 at 991.070 kb on - strand at 991.079 kb on - strand at 991.079 kb on - strand at 991.184 kb on - strand, within ECD_00933 at 991.331 kb on - strand, within ECD_00933 at 991.436 kb on - strand, within ECD_00933 at 991.476 kb on - strand, within ECD_00933 at 991.587 kb on - strand, within ECD_00933 at 991.592 kb on - strand, within ECD_00933 at 991.592 kb on - strand, within ECD_00933 at 991.596 kb on - strand, within ECD_00933 at 991.596 kb on - strand, within ECD_00933 at 991.637 kb on - strand, within ECD_00933 at 991.691 kb on - strand, within ECD_00933 at 991.703 kb on - strand, within ECD_00933 at 991.703 kb on - strand, within ECD_00933 at 991.739 kb on - strand, within ECD_00933 at 991.743 kb on - strand, within ECD_00933 at 991.743 kb on - strand, within ECD_00933
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 988,657 + ECD_00930 0.90 -1.3 988,683 + +0.4 988,751 + -1.5 988,789 + -0.9 989,024 + ECD_00931 0.44 +0.3 989,119 + ECD_00931 0.58 +0.5 989,119 + ECD_00931 0.58 -0.2 989,212 + ECD_00931 0.73 -0.5 989,270 + ECD_00931 0.82 -0.4 989,299 + ECD_00931 0.86 +0.3 989,351 + -0.5 989,840 - ECD_00932 0.19 -2.0 991,070 - -1.9 991,079 - +0.1 991,079 - -0.8 991,184 - ECD_00933 0.18 +1.1 991,331 - ECD_00933 0.32 +0.1 991,436 - ECD_00933 0.42 -0.2 991,476 - ECD_00933 0.45 -1.2 991,587 - ECD_00933 0.55 -1.2 991,592 - ECD_00933 0.56 -1.5 991,592 - ECD_00933 0.56 -3.0 991,596 - ECD_00933 0.56 -2.1 991,596 - ECD_00933 0.56 -1.5 991,637 - ECD_00933 0.60 -2.6 991,691 - ECD_00933 0.65 -0.2 991,703 - ECD_00933 0.66 -0.9 991,703 - ECD_00933 0.66 -0.3 991,739 - ECD_00933 0.69 -3.1 991,743 - ECD_00933 0.70 -1.3 991,743 - ECD_00933 0.70 -2.1
Or see this region's nucleotide sequence