Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00595 and ECD_00596 are separated by 128 nucleotides ECD_00596 and ECD_00597 are separated by 100 nucleotides ECD_00597 and ECD_00598 are separated by 208 nucleotides
ECD_00595: ECD_00595 - putative NAD(P)-binding amidase-type enzyme YbeM (C-N hydrolase family), at 618,392 to 619,180
_00595
ECD_00596: ECD_00596 - TatABCE protein translocation system subunit, at 619,309 to 619,512
_00596
ECD_00597: ECD_00597 - lipoate synthase, at 619,613 to 620,578
_00597
ECD_00598: ECD_00598 - LysR family putative transcriptional regulator, at 620,787 to 621,740
_00598
Position (kb) 619
620
621 Strain fitness (log2 ratio) -1
0
1
2
3 at 618.613 kb on + strand, within ECD_00595 at 618.614 kb on - strand, within ECD_00595 at 618.673 kb on + strand, within ECD_00595 at 618.732 kb on - strand, within ECD_00595 at 618.840 kb on + strand, within ECD_00595 at 618.841 kb on - strand, within ECD_00595 at 618.894 kb on + strand, within ECD_00595 at 618.980 kb on + strand, within ECD_00595 at 618.980 kb on + strand, within ECD_00595 at 618.980 kb on + strand, within ECD_00595 at 618.980 kb on + strand, within ECD_00595 at 618.981 kb on - strand, within ECD_00595 at 618.981 kb on - strand, within ECD_00595 at 618.982 kb on + strand, within ECD_00595 at 618.982 kb on + strand, within ECD_00595 at 618.982 kb on + strand, within ECD_00595 at 619.035 kb on + strand, within ECD_00595 at 619.035 kb on + strand, within ECD_00595 at 619.174 kb on - strand at 619.174 kb on - strand at 619.176 kb on + strand at 619.177 kb on - strand at 619.290 kb on - strand at 619.290 kb on - strand at 619.308 kb on + strand at 619.308 kb on + strand at 619.340 kb on + strand, within ECD_00596 at 619.504 kb on - strand at 619.539 kb on - strand at 620.604 kb on - strand at 620.674 kb on - strand at 620.748 kb on + strand at 620.774 kb on + strand at 620.811 kb on + strand at 620.812 kb on - strand at 620.812 kb on - strand at 620.812 kb on - strand at 620.814 kb on + strand at 620.855 kb on - strand at 620.855 kb on - strand at 620.886 kb on + strand, within ECD_00598 at 620.938 kb on + strand, within ECD_00598 at 620.961 kb on + strand, within ECD_00598 at 620.962 kb on - strand, within ECD_00598 at 621.096 kb on + strand, within ECD_00598 at 621.096 kb on + strand, within ECD_00598 at 621.176 kb on + strand, within ECD_00598 at 621.334 kb on + strand, within ECD_00598 at 621.380 kb on + strand, within ECD_00598 at 621.380 kb on + strand, within ECD_00598 at 621.403 kb on + strand, within ECD_00598 at 621.403 kb on + strand, within ECD_00598 at 621.455 kb on + strand, within ECD_00598 at 621.465 kb on + strand, within ECD_00598
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 618,613 + ECD_00595 0.28 +0.7 618,614 - ECD_00595 0.28 +3.1 618,673 + ECD_00595 0.36 -0.2 618,732 - ECD_00595 0.43 -0.1 618,840 + ECD_00595 0.57 -0.0 618,841 - ECD_00595 0.57 +0.1 618,894 + ECD_00595 0.64 -0.5 618,980 + ECD_00595 0.75 -0.0 618,980 + ECD_00595 0.75 +0.2 618,980 + ECD_00595 0.75 +0.1 618,980 + ECD_00595 0.75 +0.7 618,981 - ECD_00595 0.75 -1.1 618,981 - ECD_00595 0.75 +0.8 618,982 + ECD_00595 0.75 -0.7 618,982 + ECD_00595 0.75 +0.5 618,982 + ECD_00595 0.75 +0.9 619,035 + ECD_00595 0.81 +0.2 619,035 + ECD_00595 0.81 -0.1 619,174 - -1.1 619,174 - -0.1 619,176 + +0.5 619,177 - +1.0 619,290 - +0.1 619,290 - -0.8 619,308 + -0.9 619,308 + +0.1 619,340 + ECD_00596 0.15 +0.2 619,504 - -1.3 619,539 - -0.7 620,604 - -0.5 620,674 - +1.5 620,748 + +0.1 620,774 + +0.9 620,811 + -1.3 620,812 - +0.9 620,812 - -0.9 620,812 - -0.5 620,814 + -0.5 620,855 - -0.7 620,855 - -0.3 620,886 + ECD_00598 0.10 -1.5 620,938 + ECD_00598 0.16 +0.6 620,961 + ECD_00598 0.18 +0.0 620,962 - ECD_00598 0.18 +1.2 621,096 + ECD_00598 0.32 +0.1 621,096 + ECD_00598 0.32 -1.0 621,176 + ECD_00598 0.41 -1.0 621,334 + ECD_00598 0.57 -0.3 621,380 + ECD_00598 0.62 -0.1 621,380 + ECD_00598 0.62 -1.7 621,403 + ECD_00598 0.65 -1.3 621,403 + ECD_00598 0.65 -0.3 621,455 + ECD_00598 0.70 +0.9 621,465 + ECD_00598 0.71 -0.6
Or see this region's nucleotide sequence